LOCUS AK243257 1321 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100048N01, full insert
sequence.
ACCESSION AK243257
VERSION AK243257.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1321)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1321
/clone="J100048N01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="2ppm BAP(benzyl amino purine)"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 198..854
/db_xref="Osa1:LOC_Os12g36900"
/note="(Rice Genome Annotation Project) fiber protein
Fb2, putative, expressed"
/note="mapping to R12-TIGRv4S1-000645F (Chr.12: short
arm=22583242, long arm=22588616, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH01512.1"
/translation="MDMDSWERLAADARLQGSCFDALIGMEEAEGSEGEEEAAEVACP
FCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNR
RVSHGSHSSTRATLKKDAAYLQYRYGGSTRAASHNTDPDPLLSSFVGNFTDTDLPKDV
QQEFRDETDEKSDSLVQKEQKPVESADEPLLPEVKEERTRRSQFVQGLVLSLMFDDIL
"
BASE COUNT 339 a 331 c 346 g 305 t
ORIGIN
1 ggccacacac tctccctctc cgtgtcggtg tctcatctct ctctctcttc ccatccgccg
61 ccaaaaccct agccccccct aaaccccgcc gcccgatcgc cgccgccgcc gccgccctcc
121 cgctttcgcg gcctccggtt tgggcgcccc ccccccgccc ggcccaagaa ccgtgtgccc
181 ccgccgccgc cgccgcgatg gacatggact cgtgggagcg cctcgccgcg gacgccaggc
241 tgcagggttc gtgcttcgat gcgttgattg ggatggagga ggcggagggg agcgaaggcg
301 aggaggaggc ggcggaggtg gcgtgcccgt tctgcgacga ggagttcgac ggattcgggc
361 tttgctgcca catcgaggac gaacaccagg cggagaacag ggccggggtg tgtccaattt
421 gctacgatgc ggttgggatg gacttggtta gtcacatcac ttcggaacat cccagtttct
481 tcaagggcaa atggagaaat cggcgagttt cacatggatc acattcttca acgcgtgcca
541 cattaaaaaa ggacgcggca tatctgcagt accgttatgg aggatccaca cgtgctgctt
601 cacacaacac agatcctgat cctctactat cctcttttgt tggtaacttc accgacacag
661 atttaccaaa agatgtacaa caagagttcc gagatgaaac ggatgagaaa agtgattcct
721 tagtacagaa ggaacagaaa ccggtggaaa gtgctgatga gcctctgctc cctgaggtca
781 aggaagagag aactcggagg agccaattcg tgcaggggct ggtattgtcc ctgatgtttg
841 atgacatctt gtgaagagtt acattctaaa aattgattga aggcaacagt cgcttccgcg
901 aaacagtata ataccaagcg gaagttgctg atgtctaagc tgatttgcca tctgaagatg
961 acagcattgt tctaggatca tcagaaggat gaatttgtga atatatggat gctcgttagc
1021 atgtcacggg tgtgtcgcct caacaaataa gattatatgt atattttggt aacatcacga
1081 atacctgtgt tatcaggaga cccaagtggt aacatcacga atacctgtgt tatggtccat
1141 gtaatcaagg tatgtaagat caaggtacac gcgtgacaaa tcgatgaaaa ttcaaggtag
1201 gcatcagcat caactccaca caattgaagg tttgaagaaa caatgacatt cttcagcctt
1261 ggaagtatac atatcaactt gaaatattat attcatacat aaatgaagtg tgtgtgcatg
1321 t
//