LOCUS AK243050 2028 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100011E04, full insert
sequence.
ACCESSION AK243050
VERSION AK243050.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2028)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2028
/clone="J100011E04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="in anaerobic condition for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 467..1786
/db_xref="Osa1:LOC_Os12g02200"
/note="(Rice Genome Annotation Project) CBL-interacting
serine/threonine-protein kinase 15, putative, expressed"
/note="mapping to R12-TIGRv4S1-000040R (Chr.12: short
arm=678081, long arm=681143, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAH01425.1"
/translation="MESRGKILMERYELGRLLGKGTFGKVHYARNLESNQSVAIKMMD
KQQVLKVGLSEQIRREITTMRLVAHKNIVQLHEVMATRNKIYFVMEYVKGGELFEKVA
KRGKLTEVVAHKYFQQLISAVDYCHSRGVYHRDLKPENLLLDENENLKVSDFGLSALS
ESKRQDGLLHTTCGTPAYVAPEVISKIGYDGAKSDIWSCGVILFVLVAGYLPFQGPNL
MEMYRKIQHGEFRCPGWFSRKLQKLLYKIMDPNPSTRISIQKIKESTWFRKGPEENRI
LKERTLNENTTKNVALVLGVRRKKNAHEDVKPMSVTNLNAFEIISFSKGFDLSGMFIV
KEWRNEARFTSDKSASTIISKLEDVAKALNLRVRKKDNGVVKMQGRKEGRNGVLQFDI
EIFEVTTSYHIIEMKQTSGDSLEYRQLLEEGIRPALKDIVLAWHGDE"
BASE COUNT 599 a 363 c 510 g 556 t
ORIGIN
1 gttgcatcca ctccacatac taccactcaa aaactctctc tctctaccca aacaggtttt
61 gagaaagaag tggaggacag atccaaaaag ttcacctttt gattatccaa acaagtttgg
121 agtttgttac ctgaatctcc tcttcttcct gtcaccggaa gggaaattga taaaaaaaaa
181 gcagtgaaag cctcaaggaa tgctgaaaga tgtgcttgca tagaagaaat tttccgtgtg
241 agataaagca gattgctggt tcactagtgc tactgatctg ctcaagtctt gatgtgagtg
301 atcaactttc ctgcactaat tctacaccat ttagactccg aaacgacgat gatataagaa
361 tgttgttctc cattcatgat catgaccttg gggaggatgg ctaaagaatt gcagtccatc
421 tgattggtgg tcaaaacata gtgctgagat ttatatcttt gtgggcatgg agagtagagg
481 gaagatacta atggagaggt atgagttggg cagattgttg gggaaaggaa catttggcaa
541 ggtgcactat gcaaggaatc tggagtcaaa ccagagtgtg gccataaaga tgatggacaa
601 acagcaggtg ttgaaggtcg ggctttcgga gcagatcaga cgtgagatca caaccatgcg
661 gttggtggct cataagaaca ttgttcagct tcatgaggtc atggcaacac ggaacaagat
721 ctactttgtg atggagtatg tgaaaggtgg tgagctattt gaaaaggttg caaagcgtgg
781 aaagcttaca gaggttgttg cacataagta cttccagcaa ctcattagtg cagtggatta
841 ctgccacagt cgaggtgtgt atcaccggga cttgaagcct gaaaacctgc tgttggatga
901 gaatgagaac ctgaaagtct cagactttgg actgagtgcg ctttcagagt cgaagaggca
961 agatggctta ctccatacca cctgtggaac acctgcatat gtagctccag aggtgatcag
1021 caagatagga tatgatggtg caaagtcaga tatttggtct tgtggtgtta tcctgtttgt
1081 tcttgttgct ggttaccttc ctttccaggg cccaaacttg atggaaatgt atcggaagat
1141 acaacatggt gaattcaggt gccccggttg gttttcacgc aaacttcaga agttgttgta
1201 caagatcatg gaccccaacc caagcacaag gatttcaatc cagaagataa aggagtctac
1261 ctggttccgg aaaggtcctg aggagaatcg tattttgaag gaaagaactt tgaatgaaaa
1321 caccaccaaa aatgttgctc tggtgcttgg tgtgagacgc aagaaaaatg ctcatgaaga
1381 tgtgaagccc atgtcagtga caaacttaaa tgcctttgaa attatctctt tctccaaggg
1441 gtttgatctc tctggcatgt tcattgtaaa ggaatggaga aatgaggcaa ggttcacttc
1501 agataaatct gcctcaacca taatctcaaa gctagaagat gtagcaaagg cgctaaatct
1561 cagggtaagg aagaaagaca atggtgtagt gaagatgcaa gggaggaagg agggaaggaa
1621 tggtgttctt cagtttgaca tagagatatt tgaggttacc acttcctatc atatcatcga
1681 gatgaaacaa acaagtggcg attcattgga gtaccgacag ctactggagg agggcatccg
1741 gccagctctg aaggacattg tcttggcctg gcatggagat gaatagcagc agtcgcaaga
1801 gtagattttg atgtctcaag catttagttt ccgctcctca aattcattag gttttagctc
1861 aaatgaattt atttgtcttg cctatgttct ttttagcatc tatgtttttg tatctggaga
1921 gttcatgttg aggcaatcta tgcacaattt agatggagtc tgtcgagagt aattttatga
1981 gaagttgagc tgcaatataa aagttggctt tgagcctttc aagctttc
//