LOCUS AK243031 2453 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100004F15, full insert sequence. ACCESSION AK243031 VERSION AK243031.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2453) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2453 /clone="J100004F15" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="gamma-irradiated (4min), after 10hr" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" misc_feature 1..2453 /db_xref="Osa1:LOC_Os05g32210" /note="(Rice Genome Annotation Project) NAD kinase 3, putative, expressed" /note="mapping to R05-TIGRv4S1-000595F (Chr.5: short arm=18695754, long arm=18703676, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 631 a 604 c 559 g 659 t ORIGIN 1 ctctctggcc catcagtttg tcgcgtccat ccatccatcc atccattgcg ggccttcgat 61 ccatccccaa ccgcgccacc catcctcgcc gacgctcgcg cagccgcacc cgcacagcgc 121 cgccgatcga ccccgtcgcg gatccgcgct cctcgccgcc ggcgaaccgc cgtccgcccc 181 gccccgcccc accgcagtgc ccgcgcacgc actgcccccc tcgtgccgca gcccgcagtc 241 ggcgacggtc cctcctccgg tggcggtgat ctcgtcgctg gacgtacggt gcttcgctcg 301 accagccacg acagcgcggg ccccgcgtgg ccgcgtcgag ggtccttccc tccctccctc 361 atccacctcc aggctccccg tcgccgcccg aggctatgga tggccggcgc ttggattgtg 421 atgggagagt aaaccttagt gtggctacct cagatcagac cttagatagt tcaatggaat 481 cagagagggc agcttatgcg tttcttcccc aaactccaat caagtcaacc gatgcacacc 541 tcgttgagtt ctcggaggct atgagagctg ttgcgaaaac attgcgacaa gttgcagaag 601 ggaaagctgc tgctcaagca gaggcagctg agtggaagcg caagtatgaa ttagaaaagg 661 cagtcaaggc acacaggcat aatactgtaa ccaaaggctg cagtaactgt gacaaggaaa 721 agttagagca gttggctagt cagctgacat tggagaccac gtcggttgat ccaacaagtt 781 gctgcggaaa tcatgagatc tgttcacgtc aaattctcca ggacgaatgc cctggaacta 841 ataaaatttc gcatgacaag attgctgcaa gaaaggcacc atttaaactt tcatggggat 901 gcaatgggga taataatggt cagcacaagc atgattttgt atccttcgaa aaaggggata 961 taacaacagc tgaacgcagc aataagcaga ttttgctaaa gtgggaatcc cctccacaaa 1021 ctgttctttt cgtgactaaa cctaattcca actccgtgca cgctctctgt gctgaaatgg 1081 ttaggtatgt tttctttctg ctctgtgtgc caacatggtc aggtatgtca aaggttttat 1141 attttatcaa tcatctgagt tcggcattaa aaatagcttc ttttttgttt ctggaacttg 1201 tcctctccta atttacttat gttaagcaga ttttgttgat aaataatgtt gcatggaatt 1261 gtatattttt cattcaatat cgttgtttca cttgtgctaa tgtctgccgt tctccgcaga 1321 tggcttaaag agcacaataa tataaacatc tttgtagagc cacgagttag caaggaacta 1381 gtgactgaag attcatactt caactttatc caaacatggg ataatgatga ggaaatgaag 1441 acattacaca cgaaggttga tctcattgta actcttggag gtgatggaac agttttatgg 1501 gcagcatcat tgttcaaagg accagttccc cctgttgttg cgttctctct tggatcattg 1561 ggattcatga cccccttctc aagtgagctg tatcgtgagt gtttggacca tgtgctgaaa 1621 aggccatttg gcatcacact aaggagtcgt ctgcagtgtc atgtaatcta cgattcagct 1681 aaaaatgaag ttgatacgga ggagccaatt ctagtgctga atgaggttac aattgaccgt 1741 gggatgtcat cgtaccttac ctacttagaa tgctattgtg acagttcttt tgtcacacgt 1801 gttcaaggag atgggttaat aatatcaaca acatctggaa gcacagctta ttcattggca 1861 gctgggggat cgatggttca tccacaggtc ccagggatcc ttttcacgcc aatctgtccc 1921 cattcattat cattcaggcc tttgatacta cctgaatatg tgacattgcg tgtgcaagtg 1981 cctggtggac tcaacaactg acttcctgcg aagcatccat gagggcctcc actggaacct 2041 gaggaagagc cagtcgtttg atggccctgt tgcatgatca atgaacttct ggtctggaaa 2101 attcgatgcg tctgttgaat tggtagatgt ggtatttcaa agcatctcct caacagtcca 2161 agagaaagag aaaaaaaaaa aaaccctaat cagatgtatg tacctacgtc agttatgccg 2221 ttaattgtct aacagatcat ctcctttacc attctctgta cacaagattt gtactgtttc 2281 tagtatattt tgggcttata ggtctgtgca gagtccaaag gcatgcccac catgtccatg 2341 taaagcgctt ttacatgatg aagagtcttt gtacaagaag caattgagca gacttcttca 2401 ctgctatttt cttcttcaca aaaatatatg aataaataaa ttaaatcttc tcc //