LOCUS AK242601 4123 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090014G03, full insert
sequence.
ACCESSION AK242601
VERSION AK242601.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4123)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4123
/clone="J090014G03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="1 day after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
misc_feature 1..4123
/db_xref="Osa1:LOC_Os12g36890"
/note="(Rice Genome Annotation Project) CSLD4 - cellulose
synthase-like family D, expressed"
/note="mapping to R12-TIGRv4S1-000676R (Chr.12: short
arm=22569372, long arm=22573746, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 659 a 1373 c 1386 g 705 t
ORIGIN
1 gactcatcga tcccctcctc cattcacatg agagatcctc gagatcccta taatttctcc
61 cccaattcgt cgcggccaat ccttcccccg agctcgagct gatcggcgtg agctttttct
121 cgccggagtt gagctgagcc cggcggtttt cgggtgtgga tttgagcttg agctgaagtg
181 aagtgagctt gtggttttga ggtgatttgt gggggatgtc gcggcggctg tcgttgccgg
241 cgggggcgcc ggtgacggtg gcggtgtcgc cggtgcggag cccggggggt gacgcggtgg
301 tgaggagggg gagcgggctg acgtcccccg tgccgaggca ctcgctcggg tcgtccaccg
361 ccacgctgca ggtgtcgccg gtgaggcgga gcggcgggag taggtacctc ggcgcgtcga
421 gggatggcgg cgccgatgag agcgccgagt tcgtgcacta caccgtgcac atcccgccca
481 cgcccgaccg ggcgacggcg tccgtggcga gcgaggcgga ggcggcggcg gaggccgagg
541 aggtgcaccg gccgcagcgg agctacatct ccgggacgat attcaccggg gggctcaact
601 gcgccacgcg cggccacgtg ctcaacttct ccggcgaggg cggcgccacc gccgcctcca
661 gggcggcggc gtcggggaac atgtcgtgca agatgcgcgg gtgcgacatg cccgcgttcc
721 tcaacggcgg ccgcccgccg tgcgactgcg ggttcatgat ctgcaaggag tgctacgcgg
781 agtgcgccgc gggcaactgc cccggttgca aggaggcctt ctccgcgggc tccgacaccg
841 acgaatccga ctccgtcacc gacgacgacg acgacgaggc cgtctcctcc tccgaggaga
901 gggaccagct gccgctgaca tccatggcga ggaaattttc cgtggtgcac tccatgaagg
961 tccccggcgc cgccgccaac ggcaacggca agccggccga gttcgaccac gcccgctggc
1021 tcttcgagac caagggcacc tatggctacg gcaacgctct ctggcccaag gacggccacg
1081 cccatagcgg cgccggcttc gtcgccgccg acgagccccc caacttcggt gcccgctgcc
1141 gccgccccct caccagaaaa accagcgtct cccaagccat tctcagcccc tacaggttgt
1201 tgattgcgat tcggctggtg gcgctggggt tcttcctcgc gtggaggatt cggcatccga
1261 atccggaggc ggtgtggctg tgggcgatgt cggtggcgtg cgaggtgtgg ttcgccttct
1321 catggctgct cgacagcctc cccaagctct gccccgtcca ccgcgccgcc gacctcgccg
1381 tcctcgccga gcggttcgag tcgccgacgg cgcgcaaccc caagggccgc tccgacctcc
1441 ccgggatcga cgtgttcgtc accagcgccg acccggagaa ggagccgccg ctggtcaccg
1501 ccaacaccat cctctccatc ctcgccgcgg actaccccgt cgagaagctc gcttgctacc
1561 tctccgacga cggcggcgcg ctgctgtcgt tcgaggcgct cgccgagacg gccagcttcg
1621 cgcgcacgtg ggtgccattc tgccgcaagc acggcgtcga gccgcggtgc cccgaggcgt
1681 atttcggcca gaagagggac ttcctcaaga acaaggtgcg cgtcgacttc gtccgcgaga
1741 ggcggaaggt gaagcgcgag tacgacgagt tcaaggtgcg ggtgaactcg ctccccgagg
1801 cgatccggcg gcgctccgac gcgtacaacg ccggcgagga actgcgcgcc aggaggcggc
1861 agcaggagga ggccgccgcc gcggctgccg ccggcaacgg cgagcttgga gcggcggcgg
1921 tcgagaccgc cgccgtgaag gccacgtgga tgtcggacgg ctcgcactgg ccggggacgt
1981 ggacgtgccc cgcggcggac cacgcccgcg gcgaccacgc cgggatcatc caggcgatgc
2041 tggcgccgcc gacctcggag ccggtgatgg gaggcgaggc ggcggagtgc ggcgggctga
2101 tcgacaccac gggcgtggac gtccgcctcc cgatgctggt gtacgtgtcg cgggagaagc
2161 gcccgggcta cgatcacaac aagaaggccg gcgccatgaa cgcgctggtg cggacgagcg
2221 ccatcatgtc gaacgggccc ttcatcctca acctcgactg cgaccactac gtgcacaact
2281 cgtcggcgct ccgggagggg atgtgcttca tgctcgaccg cggcggcgac cgcgtgtgct
2341 tcgtccagtt cccgcagcgg ttcgagggcg tcgaccccag cgaccggtac gccaaccaca
2401 acctcgtctt cttcgacgtg tccatgcgcg ccatggacgg gcttcagggc cccatgtacg
2461 tcggcaccgg ctgcgtcttc cgccgcaccg cgctgtacgg cttcagcccg ccccgcgcca
2521 ccgagcacca tggctggctc ggccgcagga agatcaagct gttcctcacc aagaagaaga
2581 gcatgggcaa gaagacggac agggccgagg acgacaccga gatgatgctg ccgccgatcg
2641 aggacgacga cggcggcgcc gacattgagg cctcggctat gctaccgaag cggttcggcg
2701 ggtcggcgac gttcgtggcg tcgatacccg tggcggagta ccagggtcgg ctgctgcagg
2761 acacccccgg gtgccaccac ggccgccctg cgggcgcgct cgctgtgccg cgcgagccgc
2821 tcgacgcggc gacggtggcg gaggccatcg gcgtgatctc ctgcttctac gaggagaaga
2881 cggagtgggg gcggcgcatc gggtggatct acggctccgt caccgaggac gtggtcaccg
2941 gctaccggat gcacaaccgc gggtggcgct ccgtctactg cgtgacgccg cggcgcgacg
3001 cgttccgcgg cacggcgccg atcaacctca ccgaccgcct ccaccaggtg ctccggtggg
3061 cgacgggctc cgtcgagatc ttcttctccc gcaacaacgc cctcttcgcc tcgccgcgga
3121 tgaagctgct gcagcgcgtc gcctacttca acgccgggat gtaccccttc acctccgtgt
3181 tcctcctcgc ctactgcctc ctcccggccg tctccctctt ctccggcaag ctcatcgtgc
3241 agcgactcag cgccaccttc ctcgccttcc tcctcgtcat caccctcacc ctctgcctcc
3301 tcgccctgct cgagatcaag tggtccggga tcacgctcca cgagtggtgg cgcaacgagc
3361 agttctgggt gatcggcggc accagcgcgc acccggccgc cgtgctgcag ggcctactca
3421 aggtgatcgc cggcgtggac atctccttca cgctgacctc caagccgggg aacggcggcg
3481 gcgatggcgg ggtcggcggc gaggggaacg acgacgaggc gttcgcggag ctgtacgagg
3541 tgaggtggag ctacctgatg gtgccgccgg tgacgatcat gatggtgaac gcggtggcga
3601 tcgcggtggc ggcggcgagg acgctgtaca gcgagttccc gcagtggagc aagctgctcg
3661 gcggcgcctt cttcagcttc tgggtgctgt gccacctcta cccgttcgcc aagggcctcc
3721 tcggccgccg cggccgcgtg cccaccatcg tcttcgtctg gtcgggcctc atctccatga
3781 tcatctccct cctctgggtc tacatcaacc cgcccgccgg cgcccgggag cgcatcggcg
3841 gcggcggatt cagcttccca tagccgaaga agaagaagaa gaagaaagaa gttatttatc
3901 agtagtgtag tggtgtcgag ttcagtttct tgaagctctg aactttctga agctcacatg
3961 aaggagtgct tgcttcatgg ggcgtgttgt caaattcagt tcagtaaaag tacttttacc
4021 gaagtattag gtgtgattaa gcgattgttt gtgtatcaat taagttactt gtgattaatt
4081 gatactgatt atgtatcaaa tattggagac atgtcatatg att
//