LOCUS AK240937 1762 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065041L24, full insert
sequence.
ACCESSION AK240937
VERSION AK240937.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1762)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1762
/clone="J065041L24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 86..1492
/db_xref="Osa1:LOC_Os06g12870"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R06-TIGRv4S1-000384R (Chr.6: short
arm=7042614, long arm=7044627, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00912.1"
/translation="MVTTNFVQNHHLQNSQFFLLPKRQLVTYALYALIPLALLHYLLF
NPVATAKKPVVVVVQATDDASVIASSHHEHVKVNAKQLPVPPSDQGDEGFKKNAIAGE
VAAAAACDYSDGEWVPDARPPLYNGTSCATIKDGQNCMAHGRPDTGYLHWRWRPRRCD
LPAFSPEAFLGWLRGKHLAFVGDSLARNQAESLVCLLASRSTPELVHRDGEENRFRRW
AFREHDATVSIFWSPFLVKAAEKAERAGVRHNNVFLDAFDERWMSGLGGLDAVVLSIG
HWFLIPGIYHDAGEVVGCHDCAEFNHTETPFFAVFRQAVHRTLAEITRRHVLAAGAGT
SKSKSKVVAFTTFSPAHFEGEWDKAGACNKTRPYKNGEKEAGYTEAEMRKTVVEEVAA
ADAAAAGGGGAGLRFAALDVTTLANLRPDGHPGPYMRGDPFAGGGGGARVQNDCVHWC
LPGAIDTFNEILLQTITR"
BASE COUNT 323 a 554 c 568 g 317 t
ORIGIN
1 ggatcccttt cttctcccca tccctctttg ccatggtttc cgcatcttga gctgagcaga
61 gcacagcttg tacctgcagc cagccatggt gaccaccaat ttcgtgcaga accaccacct
121 tcagaacagc cagttcttcc tgctccccaa gaggcagctt gtgacctacg ccctctacgc
181 tctcatccct ctcgccctcc tccattacct tctcttcaac cctgtggcca ctgccaagaa
241 gccggtggtg gtggtggttc aggcgacaga cgatgcttcg gtcatcgcct cgtctcatca
301 cgagcatgtc aaggtgaatg ccaagcagct gcctgtgccc ccttctgacc aaggagatga
361 agggttcaag aagaatgcga tagccggaga agtggcggcg gcggcggcgt gcgactactc
421 cgacggcgag tgggtgccgg acgcgcggcc gcctctctac aacgggacga gctgcgccac
481 gatcaaggat gggcagaact gcatggcgca cggccggccg gacaccggct acctccactg
541 gcggtggcgg ccgcggcggt gcgacctccc ggcgttctcg ccggaggcgt tcctcggctg
601 gctccgcggc aagcacctcg cgttcgtcgg cgactcgctg gcgcgcaacc aggcggagtc
661 gctggtgtgc ctcctggcgt cccgctccac gccggagctc gtgcaccgcg acggcgagga
721 gaacaggttc cggcggtggg cgttccggga gcacgacgcc accgtgtcca tcttctggtc
781 gccgttcctc gtcaaggccg cggagaaggc ggagcgcgcc ggcgtgcggc acaacaacgt
841 gttcctggac gcgttcgacg agcggtggat gtccgggctg gggggcctcg acgccgtcgt
901 gctctccatc gggcactggt tcctgatccc gggcatctac cacgacgccg gcgaggtcgt
961 cggctgccac gactgcgccg agttcaacca caccgagacc cccttcttcg ccgtgttcag
1021 gcaggcggtc caccggacgc tcgccgagat cacccggcgc cacgtcctcg ccgccggcgc
1081 gggcacgagc aagagcaaga gcaaggtggt ggcgttcacg acgttctcgc cggcgcactt
1141 cgagggggag tgggacaagg ccggcgcgtg caacaagacg cggccgtaca agaacggcga
1201 gaaggaggcc gggtacacgg aggcggagat gcgcaagacc gtcgtggaag aggtcgccgc
1261 cgccgacgcc gccgcggccg gcggcggcgg cgcgggcctg cggttcgcgg cgctggacgt
1321 gacgacgctg gccaacctgc ggcccgacgg gcacccgggc ccgtacatgc gcggcgaccc
1381 gttcgccggc ggcggcggcg gcgcgcgggt gcagaacgac tgcgtgcact ggtgcctccc
1441 cggcgccatc gacacgttca acgagattct gctccagacc atcaccagat gacgacgttg
1501 ataagatgaa tcgtttcgtc tcgtttacga gatcatacga gtagatagtg cgaattccgc
1561 ggtaaaaatg gtttggttta gatctcagtg atttttgggt gtcgcctttg atgtagctgt
1621 aattgttaga gcatatacaa tagcaggcta taagtccgtt ataaacataa gtccgttata
1681 aacatatttt aaagagatat atgaaaagat aggagagcag cgggctacag atctgtagcc
1741 agctgcagca tgggaattgg ct
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