LOCUS AK240644 3088 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J023002O22, full insert
sequence.
ACCESSION AK240644
VERSION AK240644.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3088)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3088
/clone="J023002O22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="flower"
misc_feature 1..3088
/db_xref="Osa1:LOC_Os01g08970"
/note="(Rice Genome Annotation Project)
structure-specific recognition protein 1, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000259F (Chr.1: short
arm=4494572, long arm=4501186, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 615 a 944 c 929 g 600 t
ORIGIN
1 ggtgtttctg atcgagaaga atgcttctga caaatcgatc cctctgaaat ttcgttggtc
61 agagatcaat cgattcttca agaaggaatc gcaaatcgca atgcatgcat gaggaagcaa
121 ttgcatcgat cgatgtcatc agcaatggcg gcggcaaaag aggcagcagg tgaggaggcg
181 tcgtaagatg tttggcagct gcggcggcgg gtacaggacg cagacgatca acgggaggaa
241 ggggacgttc gtgcggctcg agcagcagga ggatcaggag cggcagccgg cggcgacgta
301 caccatggac ggcagcggcg gcggcggcag ggtgcagcac gtgatggaca gctacttctc
361 gagcgcgccc aagatccgga cgcggtcggt gcgcatggcg gcggcgggcg tgatgagcat
421 cggcggctac cgggcggagc ggctcaagag catcggccgc gtgttccagg aggacctcac
481 caacatgtcc cagaagatct tcgacccgca ggacgcgttc ctggtgcgga tgaaccgcct
541 cttcgtcatg gcctgcatcg tctccgtcgc cgtcgaccca ctcttcttct acctccccgc
601 cgtcaccgcc accgacagca acacctgcat cggcttcgac cgcggcctcg ccacgggcgc
661 caccgcggtg cgctcggcca tcgacctctt ctacctcgcc cgcatcgcgc tccagttccg
721 gacggcgtac atcgcgccgt cgtcgcgggt gttcggccgc ggcgagctgg tgatcgaccc
781 ggccgccatc gcgcggcgct acgtccgccg cttcttcgtc gtcgacctcc tctccgtgct
841 cccgctgccg cagatcccca tctggaactt cctccaccgc cccaagggcg ccgacctcct
901 gcccaccaag aacgccctcc tcttcatcgt cctcgtccag tacatccccc gcctcgtccg
961 cttctacccc atcacctccg agctcaagcg caccaccggc gtcttcgccg agaccgcctt
1021 cgccggcgcc gcctactacc tcctcctcta catgctcgcc agccacatgg tgggggcgtt
1081 ctggtacctg ctatcgatcg agaggctgga cgactgctgg agggagaact gcagggtgct
1141 caagttccat cagtgcaaga agtacatgta ctgcggagga gggaacctgg ggcagtcggg
1201 tttcctggag tggaggacga tgatccggca ggtgctggtg atggagtgcg cgccggcgga
1261 cgaggccggg accgggttcc agtacgggat cttcacgacg gcgatccagt cgggcgtggt
1321 gtcgacgacg aacctggtcg ccaaggtgct cttctgcctc tggtgggggc tccagaacct
1381 gagcaccgtg gggcaggggc tgaagacgac gcactacaag ggggaggccc tgttcgccat
1441 cttcctcgcc gtgttcggcc tcatcctcat ggcgctcctc atcggcaaca tgcagacgta
1501 cctgcagtcg atgacgctgc ggcttgagga gatgcggctg cggcgccgcg actcggagca
1561 gtggatgcgc caccgcgtgc tccccgtcga cctccaggag cgcgtgtggc ggcacgacca
1621 gtaccggtgg ctggagacgc ggggcgtgga cgaggacagc ctcgtgcgca gcctccccaa
1681 ggacctgcgg cgggacgtga agcggcacct ctgcctccgc ctcgtccgcc gcgtgccgct
1741 gttcgccaac atggacgagc gcctcctcga cgccatctgc gagcgcctca agcccagcct
1801 gtgcacggag gccacctaca tcctccggga aggggacccc gtggacgaga tgctgttcat
1861 catccgcggg aggctggaga gctccaccac ggacggcggg aggatggggt tcttcaaccg
1921 gggcctcctc aaggaagggg acttctgcgg ggaggagctc ctgacgtggg cgctcgaccc
1981 caaggccgcc gccaacctgc cgctgtcgac gcgcaccgtc aaggccatct ccgaggtgga
2041 ggcgttcgcg ctccacgccg acgagctcaa gttcgtcgcc gggcagttca ggcggctgca
2101 cagcaagcag ctgcagcaga cgttccggtt ctactcgcag cagtggcgca cctgggcgtc
2161 ctgcttcatc caggccgcct ggaggaggca cctcaagcgc agggccgccg agcagcgccg
2221 ccgcgaggag gaggaggagg aggaggccgc gtcggcgtcg tcgtcctgcc agatcaccac
2281 caccgtcctc gtatcgcgct tcgccaagaa cgccatgcgc ggcgcgcagc ggcaacggtc
2341 gcgccgggac gccaacctca tcgtcctgcc caaaccgccg gagcctgact tccagaccat
2401 ggagtactga ttggtagtgt cgaattatac acaacatgca aatcttgatg gagaggaaac
2461 caattatact tttgtcagtc tggctgtacc gctgggggga tttgcaatta taacactgct
2521 gcagcaaatt tcttatttac tttacatgtt gaggtaccac cacccctggc caggagatta
2581 tcatacaatc cgtgcagaat actggacaga ttcaagcagt ggcacatgaa caaaatgcaa
2641 gacgatcatc acaaattcac aagtagttca tccgattggg taggttgatg ccagctcgcg
2701 ctagaaggtc ccttgctatt ttttcagctg aagcaattac ctcctcctgg aatagaccac
2761 aggaaaagta aaaaacagag ccacagaggc cagagtgtga gagacacaat cagttttcag
2821 tgcattatag gtacttaagc agggtgtaaa attattggtt ggtgaaccag acaattatat
2881 accaaagcct atttttagca tatggtcagc taggggtagg actgttggag taccgtttct
2941 actttctaac cattagaaat ctgaacttca gaagtgttta ttcctcatga atgttttgac
3001 attacctgtt ctagtttaac cagttcgtga attgttggca tgcaattatg ttcatcgtgt
3061 ttactgttta atctagcata tttggctc
//