LOCUS AK171544 1855 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F730230B15 product:CD244
natural killer cell receptor 2B4, full insert sequence.
ACCESSION AK171544
VERSION AK171544.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1855)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F730230B15
FEATURES Location/Qualifiers
source 1..1855
/cell_type="B6-derived CD11 +ve dendritic cells"
/clone="F730230B15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F730230B15"
/db_xref="MGI:3556093"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 134..1072
/codon_start=1
/note="CD244 natural killer cell receptor 2B4
(MGD|MGI:109294 GB|AF082803, evidence: BLASTN, 99%,
match=1047)"
/note="putative"
/protein_id="BAE42518.1"
/transl_table=1
/translation="MLGQAVLFTTFLLLRAHQGQDCPDSSEEVVGVSGKPVQLRPSNI
QTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQ
DSGHYLLEITNTGGKVCNKNFQLLILDHVETPNLKAQWKPWTNGTCQLFLSCLVTKDD
NVSYALYRGSTLISNQRNSTHWENQIDASSLHTYTCNVSNRASWANHTLNFTHGCQSV
PSNFRFLPFGVIIVILVTLFLGAIICFCVWTKKRKQLQFSPKEPLTIYEYVKDSRASR
DQQGCSRASGSPSAVQEDGRGQRELDRRVSEIRKEY"
regulatory 1837..1842
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1855
/note="putative"
BASE COUNT 461 a 413 c 464 g 517 t
ORIGIN
1 gagttgagga aattgtggct ggacaggcag tgaggtagtt ctgctgtgtc ctgctgacag
61 ttagctgcga gcctattgac atctgagcac ctggagaaga cagggccccc gtagtctgct
121 ctgtcctgtg gtgatgttgg ggcaagctgt cctgttcaca acctttctgc tcctcagggc
181 tcatcagggc caagactgcc cagattcttc tgaagaagtg gttggtgtct caggaaagcc
241 tgtccagctg aggccttcca acatacagac aaaagatgtt tctgttcaat ggaagaagac
301 agaacagggc tcacacagaa aaattgagat cctgaattgg tataatgatg gtcccagttg
361 gtcaaatgta tcttttagtg atatctatgg ttttgattat ggggattttg ctcttagtat
421 caagtcagct aagctgcaag acagtggtca ctacctgctg gagatcacca acacaggcgg
481 aaaagtgtgc aataagaact tccagcttct tatacttgat catgttgaga cccctaacct
541 gaaggcccag tggaagccct ggactaatgg gacttgtcaa ctgtttttgt cctgcttggt
601 gaccaaggat gacaatgtga gctacgcttt gtacagaggg agcactctga tctccaatca
661 aaggaatagt acccactggg agaaccagat tgacgccagc agcctgcaca catacacctg
721 caacgttagc aacagagcca gctgggcaaa ccacaccctg aacttcaccc atggctgtca
781 aagtgtccct tcgaatttca gatttctgcc ctttggggtg atcatcgtga ttctagttac
841 attatttctc ggggccatca tttgtttctg tgtgtggact aagaagagga agcagttaca
901 gttcagccct aaggaacctt tgacaatata tgaatatgtc aaggactcac gagccagcag
961 ggatcaacaa ggatgctcta gggcctctgg atctccctcg gctgtccagg aagatgggag
1021 gggacaaaga gaattggaca ggcgtgtttc tgagataaga aaggaatatt gacaagataa
1081 gaacatagac cacaagactc aagggaattc cctctgtgtg tgggtggcac agaggtcaac
1141 attgtatttt gactggttgc ctgagtcctg aggagaggga ttggatgaag acaaccgaat
1201 ttgagctgag tgttttctgc tgtcttgctc tcgacacatt gcttggctgt gggtctctgt
1261 gtttgttccc atcttctgca ggaggaagct tctctgaaga tgactgaata aggcactgat
1321 ctataaccat gacagaacac tgttaggagt cattttattg ctatattcct ctagcagaac
1381 actagtattt ggttcacccc taggagtctg acatatttgg tctcaaattc ttggccatct
1441 atgcagtgtt tgggtatggc ttccatctta tggggtgggc cttggttggt tactcccaga
1501 atctgtgtgc cactatggca cctgcatatc ttgcaggcag gtcaggaatg tagatcaaag
1561 ggtttgtagc tgggtttgtg tttacctttc tcctttggta gcacccagag acccttccag
1621 taccataggg gcgaaagctc taggtaggca ccagatccac ttctccatgt tcaatgatct
1681 gtgtaggctt tgtcttcatc tagggtctta ctgttagttt gtagagagca acctatagcc
1741 tcagcagcag gcattcctga tgcagttcct gcttcctggt tcccagcttg catgagttcc
1801 tgccctggct tccctttaca atgacccata aaataaaata aaccatttct tcttc
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