LOCUS AK170167 1334 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630024G11 product:CD244
natural killer cell receptor 2B4, full insert sequence.
ACCESSION AK170167
VERSION AK170167.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1334)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630024G11
FEATURES Location/Qualifiers
source 1..1334
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630024G11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630024G11"
/db_xref="MGI:3553240"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 132..1157
/codon_start=1
/note="CD244 natural killer cell receptor 2B4
(MGD|MGI:109294 GB|AF234830, evidence: BLASTN, 99%,
match=1026)"
/note="putative"
/protein_id="BAE41613.1"
/transl_table=1
/translation="MLGQAVLFTTFLLLRAHQGQDCSDSPEEVVGVSGKPVRLRPSNI
QTKDVSVQWKKKVQGSHTNTEILISCNNNASRCSTVVSSDIYGFDYGDFALSIKSAQL
QDSGHYLLELTYRNGTVCTKNFQILILDHVETPHLKAQWNAWTNGTCQLFLSCSVPKD
DNVSYALYRGSTLISNQRNSTHWENQTDASSLHTYTCNVSNRASWANHTLNFTHGCQS
VHLNFRFLPFGVIIVILVTLFLGAIICFCVWTKKRKQLQFSPKEPLTIYEYVKDSRAS
RDQQGCSRASGSPSDVQEDGRGQRELDRRVSEVMFSSLLAFLLHQFPGSTQRGKGEKR
ESRENGK"
BASE COUNT 348 a 301 c 340 g 345 t
ORIGIN
1 gttggggaaa ttgtggctgg acaggcagtg aggtagttct gctgtgtcct gctgacagtt
61 agctgcgagc ctattgacat ctgagcacct ggagaagaca gggcccccgt agtctgctct
121 gtcctgtggg gatgttgggg caagctgttc tgttcacaac gtttctgctc ctcagggctc
181 atcagggcca agactgctca gattctcctg aagaagtggt tggtgtctca ggaaagcctg
241 tccggctgag gccttccaac atacagacaa aagatgtttc tgttcaatgg aagaagaaag
301 tacagggctc acacacaaac actgagatcc tgatttcgtg taataataat gcttccagat
361 gctcaactgt ggtttctagt gatatctatg gctttgatta tggggatttt gctcttagta
421 tcaagtcagc tcagctgcaa gacagtggtc actacctgct ggagctcacc tacagaaacg
481 gaacagtgtg cactaagaac ttccagattc ttatacttga tcatgttgag acacctcacc
541 tgaaggccca gtggaacgcc tggactaatg ggacttgtca actgtttttg tcctgctcgg
601 tgcccaagga tgacaatgtg agctatgctt tgtacagagg gagcacgctg atctcaaatc
661 aaaggaatag tacccactgg gagaaccaga ctgatgccag cagcctgcac acatatacct
721 gcaacgttag caacagagcc agctgggcaa accacaccct gaacttcacc catggctgtc
781 agagtgtcca tttgaatttc agatttctgc cctttggggt gatcatcgtg attctagtta
841 cattatttct tggggccatc atttgcttct gtgtgtggac taagaagagg aagcagttac
901 agttcagccc taaggaacct ttgacaatat atgaatatgt caaggactca cgagccagta
961 gggatcaaca aggatgctct agggcctctg gatctccctc agatgtccag gaagatggga
1021 ggggacaaag agaattggac aggcgcgttt ctgaggtgat gttcagctcc cttctagctt
1081 ttcttctcca ccagtttcct ggttctaccc aaagaggaaa aggagaaaag agagagagca
1141 gagaaaatgg gaaatagaca gaaggggtca catggtgctg tactagatct gccaaggggt
1201 ggaactcagt agaaatccat agcaaagggc agagtgtgtc taccactgcc ttcccttata
1261 gaaaccgttc agggccagct ttcctttgtg cattatccac agctggttct accctattat
1321 ttaagaactt tttc
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