LOCUS AK169547 1218 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630091N10 product:signaling lymphocytic
activation molecule family member 1, full insert sequence.
ACCESSION AK169547
VERSION AK169547.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1218)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630091N10
FEATURES Location/Qualifiers
source 1..1218
/clone="A630091N10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630091N10"
/db_xref="MGI:3543643"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS <1..408
/codon_start=1
/note="putative"
/note="signaling lymphocytic activation molecule family
member 1 (MGD|MGI:1351314 GB|AK016818, evidence: BLASTN,
99%, match=1216)"
/note="start codon is not identified"
/protein_id="BAE41222.1"
/transl_table=1
/translation="IYNCTASNPVSSISRTFNLSSQACKQESSSESSPWMQYTLVPLG
VVIIFILVFTAIIMMKRQGKSNHCQPPVEEKSLTIYAQVQKSGPQEKKLHDALTDQDP
CTTIYVAATEPAPESVQEPNPTTVYASVTLPES"
BASE COUNT 369 a 296 c 246 g 307 t
ORIGIN
1 atctacaact gcaccgcaag caaccctgtc agcagtatct ctaggacctt caacctatca
61 tcgcaagcat gcaagcagga atcctcctca gaatcgagtc catggatgca atatactctt
121 gtaccactgg gggtcgttat aatcttcatc ctggttttca cggcaataat aatgatgaaa
181 agacaaggta aatcaaatca ctgccagcca ccagtggaag aaaaaagcct tactatttat
241 gcccaagtac agaaatcagg gcctcaagag aagaaacttc atgatgccct aacagatcag
301 gacccctgca caaccattta tgtggctgcc acagagcctg ccccagagtc tgtccaggaa
361 ccaaacccca ccacagttta tgccagtgtg acactgccag agagctgacc catataccca
421 gtgaaaggac tttttgaagg aggatagaag aaccaaaatc cacactgaac tggaccccgg
481 gtcccaagtt ctctgtgaca gaaactgcac atctgtaacc ttctccaatc agttccctgg
541 tgacggatct gcacaggcgt gcttatgaag tagatgagaa gtgaggcttc ctgggcatgc
601 aacctgctct gctgctgaca cagatatgaa gcagagatcc cgtggtacag tgtaccatct
661 ttgctgtagc agataatgtg ggtttaggca tctcactctt tgctggactg gataacagaa
721 ctcaaaaaaa aaccaacaag ccaaagacat agactccatc tcagatggct gagcacaaag
781 tataaaagcc attttggctc tctggacttt attctggaag ctgatcctga tcacctcaag
841 gccaagggct ccatgcctca gtttctctct caccctctag atgaagaggg aacaaagcat
901 aaagagtgaa atccttgttg tctgagatca ttctataaac gaactgacat tttatttgca
961 aaactcaagc tagtaattca gtagacttga agatgatttt agagcctctt atgcttcaaa
1021 caacagaatg aaatccatcc aatgttcttc aaagtgttgt tctctgatta agtcaaagca
1081 acactgtttg gcaatgctgc tgtaaagttg cctggaatac tcagaggaac ttgtcccagg
1141 gaggtttttt tcacttcttc aaagaacttt tgaatttaag ttctctgttt attcccttga
1201 gcaaaactct ggaacccc
//