LOCUS AK164857 3630 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
library, clone:D930027A02 product:unclassifiable, full insert
sequence.
ACCESSION AK164857
VERSION AK164857.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3630)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D930027A02
FEATURES Location/Qualifiers
source 1..3630
/clone="D930027A02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D930027A02"
/db_xref="MGI:3550122"
/db_xref="taxon:10090"
/dev_stage="15 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..3630
/note="putative"
/note="unclassifiable"
BASE COUNT 942 a 708 c 669 g 1311 t
ORIGIN
1 tttttttttt tttttttttt tttgagacat ggtctcacta tgtagccttg gttggcctgg
61 aactcactag gtagatcagg ctttggccat atatagatcc tgagggacaa gcttccaagg
121 accaagaagc agtttcagca gcagctgttt ctactccctc cagttctctg cttttgttga
181 gctgtgacaa tgatgttgga cattcacttc ctctaattct ttatatttat tattgttttc
241 tagagctgct attttatagt tcatgttcat gatcttttaa tttttcagtt ggattaggaa
301 tatctttgcg ccccattctc tcttagtatc tgcattcttt gttgcatatg gcattggagg
361 attaaccatt ttcttttgag ccttgtatag gttgacatat tgcttttgca ctgtttttga
421 taataaattc ctactcagta cattggattt ttttgttcat atgtagatac ttggaatata
481 caatttccca tttttctaat ctggatctaa tttgtactta gtctctgaac tcccttgtgc
541 ggggctttag acttggcact ctcaccctta agcttttgtg ggtaatcttg atcttgttct
601 gtgactattt caaattttga tatcatttaa ttctagatac agtattgata aatattgata
661 tattgataga tgtagaaata ttttttctcc tgtttttgtt ttgatgcaaa tctcaaatta
721 gagagacctt ccctctcact ttgtatgatc taacctgtat tcttgctgat tttatctttg
781 atgtttttgt tttttgagac aaagtctgtt atcttggctg acctggaact ctctttgtag
841 accaggcttg tctggaattc acatagatcc acctgcctct gccctgggat taaaggcatg
901 tcctgccatg ctgggcttga tggctcttta gtacactaat ttccattttc tacttcttca
961 gtttgttttg taagtagtag ttcatggtgt ttagtttgtc tttcatgtaa attgactgta
1021 tctgggacct ttagaaaaga gacattagca cctcctcagt tactggctca gatgactctc
1081 attggggtcg tcctggctct tctttctttt ctgattagtc attccttcca acttacctgt
1141 agatattttc actcccatca catctttcta aacactgtta atgctggatt ggctctgaga
1201 ttgtgtgaat attcttcgta ttaagaaagg atttccacat tgatatttga tataaccttg
1261 atgtgatcta ttgtaatcag tccaaaaaca tcttgcataa tttgattcat aagagcattc
1321 atgaaggctc ttctctcctt atgtcaatag cttgtacata agcataagtt cagctataat
1381 tttcactgac agccagtgta atgcagtctt tgtttcttta gtattcactt catgttcaaa
1441 ggttttgtag attggagaac acagttgctt tgagcatcca tgatgtttgg gtcagcactg
1501 ttccagtggc atagaggcac actccctttt tgacactgta gagtcttcat cagatctgtg
1561 cagccactat tcaaggataa tcatacacac aagcaatata tagagcagat aggagtacag
1621 ataattccca agaagctgca tcactgaaaa gtcccatcat gtcttggact ttgacctcat
1681 gggagtcaca ttaaggaata gccatttttc tgactttata tacactcctg agctttttat
1741 gcaagttagc attcaagcta aatctttcaa cactcggtgt agagagaaga cttctgtttt
1801 aggtactgga gagatggatc agcaattaaa ggaacacttg ctgcaatggg ttcccagggc
1861 ccacttcatt aacgcagctc acaagcctaa agctaccttc aggggatcgg gtacctttgg
1921 tacctgcact cacacgggca tacccacatt cagacataca tacacatgta tgcataatta
1981 aaagtaagct tttcatttca aaaaggctct tgttgaagtt ggttatggca gtatttacct
2041 gtaatctcag catttgggaa gatcaggagt tctgagccag actagttagc atacatgtca
2101 acaacaaaag tgtaactaat aataagaata aaaacacata aataaaaaat taactcctga
2161 tagcactgta aatccaattt tttttctata tgaatgtctt taccttctca cacattctgg
2221 actattctga aaaagtttaa gtactatcat ctgtgcctcc cttattccat tagagttaac
2281 tttattatat gatagaatat cagaaacaca accagaaact ttggctgttt actataacac
2341 taaatgctct tggattccat actgataact tatttccctg gagttaatgc tagtgttctt
2401 gcctaggata aaggttttta ataactgtat tggaaatctg ctttaaaacc attttgagac
2461 tggagtgagt atgggaaact gcaagtccct ttccacagaa aggttctatt ctcccctttc
2521 cctaactctt ttgaaatgtt catccttgga tttcttttgg ttggtcggtc tgcagtgctg
2581 ggaactgagc gcagggcctt gtacatgcta gggaaacact ctaccaactg agttgctccc
2641 ccaccccttt ctgtagctcc cttcattaca agtctctgaa tcctaagagg cactccttag
2701 ttgtaaacta agtgtgtgca actaacagtc tttgaagctc tgtgaaggaa gcttgccttt
2761 ctctcagtcc acaagtcatt taggatctca tcaggatgcc agctttctcc gggaaaagat
2821 tcatgtattt tgattttggc tttttggtcc cagagttgta ttttgggaca gtcaccatta
2881 agttgttatt agagccatct ttgtgttgtc ttttcatttc atggcagaca gtatgactcc
2941 taacttgatt gaaaccactg tctttttggc tcagcaggca gcctaggccc tggctgaatg
3001 aaggggtaag tccttccttg catgatggtg tgcaggtttc ctgactacca actttctaat
3061 tttcatatgt gaattcacgt gtgtggcttc accaccataa cttgcctcct aaatactttt
3121 aacttgttag gaaggaaaga acctagactt gcttaaatct gttcaaggct gacattctga
3181 aattttaaac ggacataaca gcatttgtaa taataatcgt gcaggtctaa tgtggctctt
3241 tgggaaagaa atttctttta tgaaaacagt tttttttaaa gccagctttt taaaagctta
3301 ttcaagtgaa cctttgttgt gtagcttttg ttttcttagc tggaaaaaga tttgattaca
3361 ccaaagagta agggtggtcc attattgtga gtaaggctaa ctttccacat tataatggga
3421 cccttcctat cttcctttca aactgagaat gtcagtcatg aacttttaag cggtcatcac
3481 ttgcagctgt ttgcatgatt agtcttgtgt atcctgagag ctttgctttt ctgtgccagt
3541 tcaaaataac atttttgcta agaacattta aaattaactg atatcagttt tgttttgatt
3601 tacctggttg tgtgtagtat ttccaggacc
//