LOCUS AK162543 1663 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530096M21 product:NADH dehydrogenase 6,
mitochondrial, full insert sequence.
ACCESSION AK162543
VERSION AK162543.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE mitochondrion Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1663)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9530096M21
FEATURES Location/Qualifiers
source 1..1663
/clone="9530096M21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9530096M21"
/db_xref="MGI:3540553"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organelle="mitochondrion"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="urinary bladder"
CDS <1..>1663
/codon_start=1
/note="NADH dehydrogenase 6, mitochondrial
(MGD|MGI:102495 GB|BC055066, evidence: BLASTN, 99%,
match=1642)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE36962.1"
/transl_table=2
/translation="INIFTTSILLIFILLLSPILISMSNLIKHINFPLYTTTSIKFSF
IISLLPLLMFFHNNMEYMITTWHWVTMNSMELKMSFKTDFFSILFTSVALFVTWSIMQ
FSSWYMHSDPNINRFIKYLTLFLITMLILTSANNMFQLFIGWEGVGIMSFLLIGWWYG
RTDANTAALQAILYNRIGDIGFILAMVWFSLNMNSWELQQIMFSNNNDNLIPLMGLLI
AATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFHPLTTNNNFILTT
MLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHLAFLHICTHAF
FKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALTGMPFLTGFYSK
DLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLISINENDPDL
MNPIKRLAFGSIFAGFVISYNILPTSIPVLTMPWFLKTTALIISVLGFLIALELNNLT
MKLSMNKANPYSSFSTLLGFFPSIIHRITPMKSLNLSLKTSLTLLD"
BASE COUNT 562 a 456 c 173 g 472 t
ORIGIN
1 atcaatattt tcacaacctc aatcttatta atcttcattc ttctactatc cccaatccta
61 atttcaatat caaacctaat taaacacatc aacttcccac tgtacaccac cacatcaatc
121 aaattctcct tcattattag cctcttaccc ctattaatat ttttccacaa taatatagaa
181 tatataatta caacctggca ctgagtcacc ataaattcaa tagaacttaa aataagcttc
241 aaaactgact ttttctctat cctgtttaca tctgtagccc tttttgtcac atgatcaatt
301 atacaattct cttcatgata tatacactca gacccaaaca tcaatcgatt cattaaatat
361 cttacactat tcctgattac catgcttatc ctcacctcag ccaacaacat atttcaactt
421 ttcattggct gagaaggggt gggaattata tctttcctac taattggatg atggtacgga
481 cgaacagacg caaatactgc agccctacaa gcaatcctct ataaccgcat cggagacatc
541 ggattcattt tagctatagt ttgattttcc ctaaacataa actcatgaga acttcaacag
601 attatattct ccaacaacaa cgacaatcta attccactta taggcctatt aatcgcagct
661 acaggaaaat cagcacaatt tggcctccac ccatgactac catcagcaat agaaggccct
721 acaccagttt cagcactact acactcaagt acaatagtag ttgcaggaat tttcctactg
781 gtccgattcc accccctcac gactaataat aactttattt taacaactat actttgcctc
841 ggagccctaa ccacattatt tacagctatt tgtgctctca cccaaaacga catcaaaaaa
901 atcattgcct tctctacatc aagccaacta ggcctgataa tagtgacgct aggaataaac
961 caaccacacc tagcattcct acacatctgt acccacgcat tcttcaaagc tatactcttt
1021 atatgctctg gctcaatcat tcatagcctg gcagacgaac aagacatccg aaaaatagga
1081 aacatcacaa aaatcatacc attcacatca tcatgcctag taatcggaag cctcgccctc
1141 acaggaatac cattcctaac agggttctac tcaaaagacc taattattga agcaattaat
1201 acctgcaaca ccaacgcctg agccctacta attacactaa tcgccacttc tataacagct
1261 atgtacagta tacgaatcat ttacttcgta acaataacaa aaccgcgttt tcccccccta
1321 atctccatta acgaaaatga cccagacctc ataaacccaa tcaaacgcct agcattcgga
1381 agcatctttg caggatttgt catctcatat aatattctac caaccagcat tccagtcctc
1441 acaataccat gatttttaaa aaccacagcc ctaattattt cagtattagg attcctaatc
1501 gcactagaac taaacaacct aaccataaaa ctatcaataa ataaagcaaa tccatattca
1561 tccttctcaa ctttactggg gtttttccca tctattattc accgcattac acccataaaa
1621 tctctcaacc taagcctaaa aacatcccta actctcctag acc
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