LOCUS AK154145 4544 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630004O05
product:Transcriptional activator SRCAP homolog [Homo sapiens],
full insert sequence.
ACCESSION AK154145
VERSION AK154145.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 4544)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630004O05
FEATURES Location/Qualifiers
source 1..4544
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630004O05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630004O05"
/db_xref="MGI:3552790"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 338..3148
/codon_start=1
/note="Transcriptional activator SRCAP homolog [Homo
sapiens] (UniProt|Q9Y5L9, evidence: FASTY, 91.2%ID,
24.9%length, match=2259)"
/note="putative"
/protein_id="BAE32405.1"
/transl_table=1
/translation="MQSSPSTAHPQLPILQTQMVSDGMTGISPQHIAQDSSLDGPPGP
QDGTTVPLEGFSLSHAADLVNRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSL
KRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQK
EERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIV
GQTEKYSDLLSQSLNQPPASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEE
EEDDEETIEVEEQQEGNDAETQRREIELLRHEGELPLEELLRSLPPQLLGGPFSPSQT
PSHDSDTQDGPEENIEEEPSQDLEVHPPSSAVTQCNKQRWHPDEDDEEFTANEDEEDE
EDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYACDASAPASGDSEDED
EVEANSSDGELEETVEEAAQEDSSSQSDSAEECSEDEEDEHSEEEMSGSSQSEESESD
ESEDAQSQSQADEEQDDEGEDDDVDDDDDDDFGVEYLLARDDERSKVDGGSGPPTPGP
TTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTM
YEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWC
PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEA
QNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEW
FSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKR
QRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTSPFITPGIC
FSTASLVLRATEVHPLQVCSYP"
BASE COUNT 1252 a 1032 c 1112 g 1148 t
ORIGIN
1 ggcggggccg ccgtctgagg agtcaaaact tggcagaggt caagggtcat gctgggtgtg
61 atttccttca gtacagcacg gcaccgtgga agtgcagact ctcacagggg gtgtggtctc
121 tgctcacaca ggtactccag aggctggtga acctgagcgg aggctgggac gccctggtgg
181 gccccgggcc ctggaaggca ggtcccggtg gctggtggcc cagaatgagg ccagctccca
241 gcatgccctg cagccggaca ccagccactc ggcctgcagc aacggtgata acccagtcat
301 tcttcaggca tccagcaagg agcctgggag tgggaccatg cagagcagcc cctccactgc
361 tcatcctcag ctcccaatcc tacagacaca gatggtgtcg gacggcatga caggcatctc
421 cccccaacat atagctcaag attcctcact ggatggacct ccaggcccac aagatggtac
481 cacagttcct ctggaggggt tcagcttatc ccatgctgct gacctggtca acaggggtca
541 gaagtgggag aagagccatg cagaaattgc agagcaagcc aaacatgaag ctgaaattga
601 aactcggatt gctgaacttc ggaaggaggg attctggtca ttgaaaaggc tacctaaagt
661 gccagagcct ccccgcccta aaggacactg ggactatctg tgtgaagaga tgcagtggct
721 ctctgctgac tttgctcagg aacgcagatg gaaacgaggt gtggcccgga aggtggtacg
781 tatggtgatc cggcaccatg aagagcagcg acaaaaggag gagcgagctc ggagagagga
841 acaggccaag ctgcgccgaa ttgcttctac catggccaag gatgttaggc agttctggag
901 caatgtggag aaggtggtac aattcaaaca acagtctcgg cttgaagaaa aacgtaagaa
961 agccttggac ctgcacctgg acttcattgt agggcaaact gagaagtact cagaccttct
1021 gtctcagagc cttaaccagc caccggcctc cagcaaagct ggctcctccc cttgccttgg
1081 ttcttcctca gcagcatcca gtcctccacc cccggtttct cgactggatg atgaagatgg
1141 ggactttcaa ccccaagagg aagaagagga agatgatgag gagaccattg aggttgaaga
1201 acaacaggaa ggcaatgatg cagagaccca gaggcgtgag attgaacttc ttcgacatga
1261 gggagaactg ccactggaag agctgctccg ttccctccct cctcagttat tgggtgggcc
1321 ttttagcccc tctcaaacac cttctcatga cagtgatacc caggatgggc ctgaagaaaa
1381 tattgaagag gagccatctc aggatttaga ggtacaccct ccatcttccg ccgtcacaca
1441 atgtaacaag cagcgttggc atccagatga agatgatgaa gagtttactg ctaatgaaga
1501 tgaagaggat gaagaggaca ctatagcagc tgaagagcag ttggaagggg aggtggacca
1561 tgccatggaa ctgagcgaat tggctcgaga aggtgaactg tctatggagg agctactgca
1621 gcaatatgca ggggcctatg cctgtgatgc ctctgctcca gcctcagggg atagtgaaga
1681 tgaagatgaa gttgaagcca atagctctga tggtgaacta gaggaaacag ttgaagaggc
1741 agctcaagaa gacagtagca gtcagtcgga ttctgctgag gagtgtagtg aggatgagga
1801 agatgaacat tcagaggaag aaatgagtgg gagttcacag tcggaagaat ctgagtctga
1861 tgagtcggag gatgctcagt cccagagcca agcagatgaa gaacaagatg atgagggaga
1921 ggatgatgat gttgatgatg acgatgatga tgattttgga gtagagtact tgcttgcccg
1981 ggatgatgaa aggagtaagg ttgatggggg cagtggacct cccacccccg gtcctacgac
2041 cactctaggg cccaagaaag aaattactga tattgctgca gcagctgaaa gtctccagcc
2101 caagggttat actttggcta ctacccaggt gaagacacct attccgctac tccttcgggg
2161 ccagctccga gagtaccaac acattggcct tgactggctg gttactatgt atgagaagaa
2221 gctgaatggc attcttgcag atgagatggg actaggaaag acaatccaga ccatctcctt
2281 gcttgctcac ttggcctgtg agaaaggtaa ctggggtccc catttaatca ttgttccgac
2341 cagcgtgatg ttgaattggg agatggaatt gaaacgttgg tgcccgagtt ttaaaatcct
2401 tacttactat ggagctcaga aagagagaaa gctcaagcgg cagggctgga ccaagcccaa
2461 tgctttccat gtgtgtatca cgtcttacaa gctggtactg caagatcacc aggcttttcg
2521 tcgtaagaac tggcggtatc ttattctgga tgaggctcag aacatcaaga atttcaagtc
2581 ccaacgatgg cagtcactgc tcaactttaa cagccagagg cgcctgctcc tgacaggaac
2641 tcccttgcag aatagcctca tggagctgtg gtccttgatg cattttttga tgccacatgt
2701 cttccagtct caccgagaat tcaaggagtg gttttctaac cctctaactg gcatgattga
2761 aggaagccaa gaatataatg aaggtctagt caaacgcctc cacaaggttc tgcgaccttt
2821 tttgctgcgc cgagttaagg tggatgttga gaagcagatg cccaaaaagt atgagcatgt
2881 tatccggtgc cgactttcca agcggcaacg ctgtctctat gatgacttca tggcacagac
2941 tacaactaag gagacactag ctacaggcca ttttatgagt gtcatcaaca ttctgatgca
3001 gttgcggaaa gtctgcaatc atccaaatct atttgaccct cgacctgtta cctccccgtt
3061 catcacccca ggcatctgct ttagcaccgc ctctctggtt ctaagggcca ctgaagttca
3121 tcctctccag gtatgtagtt acccctaagg ttagtggttt tattatacaa actttctgtc
3181 tccactctaa ggcctgacct tttgtacatt aactatttcc ctattttatc aactcagtac
3241 tattttcata gctttattgt tctttagtca tgtgaccctt ggcctaatta ttggcctaag
3301 cttccttctc cgtcaaagca ggaattataa agcctagttt acagtgtgct tgaaattgaa
3361 gttaatactt ttgaaaacaa aagtctggcg tacctataat tatttggcaa atgttactta
3421 ttccttcccc gcactttttt ttttttaaga cagggtctta cagtggatcc ttggctggtt
3481 tggaactcac tatatagacc actctgtcat caaacttaga gagatttccc tgcctctgcc
3541 cctccactac tgagatcaaa tgcatgcacc tccagacctg gctctttccc acctttttaa
3601 gaaagtattt tacctgtttc agggtagttt caaacaattg ttccaactga ctccatctta
3661 tatgtggata tcccattact cctgaatcct ctaattttgt aattgtggta aaatacattc
3721 aacaaaatta ttattttaag tctacgtttt agtgacctca ggatatttgt gttgtaagtc
3781 atctctacca tccatcctca gaactgcttt tcttaaactg aaaaactgta ttgtacatac
3841 tgaagaactg tttgtttggt ttttccctat tccaatatct gtcattctac tctgttacta
3901 ttctgagttt gtgataaaat ggaatcataa agtgcctctc tatcaacgca gtggcatgtg
3961 taaaaaaaaa aaatctaccc tcaaccaatt tttaaggtaa tataacttct taaagagaat
4021 ggtaggcctg aagtacagct cgggtagagt tcttgcctag catgcaaaaa agcagtgaga
4081 tcaagctgca ttactctatc aactgagcat agtggtccat atttgtgagg tatgaaggta
4141 aaagaattaa aaattcaagc tcatcctcaa ctgtatggtt ttagcctact tctgcagtat
4201 ctgagacttt gataaccctg ctcctaatac caaaaaaaat gggggtattt ttagctggcc
4261 agtggtagag gtatacacct ttaatgccag cagaggcagg tggatctctg tcttcaaggc
4321 cagcctggtc tacagcatga gtttcaggac atcaggagct acacagagaa aacctgtttt
4381 gaagaacaaa acaaaacaaa aagtgagggt atccagcatt tagtggcatt ctatataata
4441 agctttttac atgtagcaac ttcggcaaat aaaagatctt gatcattaaa atgctgtggt
4501 taaaaagtgt agtgaaaggt caccacaaaa caaaatactt tgtt
//