LOCUS AK154055 1439 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430030F23 product:CD8
antigen, beta chain, full insert sequence.
ACCESSION AK154055
VERSION AK154055.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1439)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430030F23
FEATURES Location/Qualifiers
source 1..1439
/cell_type="thymic cells"
/clone="E430030F23"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430030F23"
/db_xref="MGI:3551561"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 26..667
/codon_start=1
/note="CD8 antigen, beta chain (MGD|MGI:88347
GB|AK087944, evidence: BLASTN, 99%, match=1429)"
/note="putative"
/protein_id="BAE32345.1"
/transl_table=1
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
BASE COUNT 360 a 383 c 351 g 345 t
ORIGIN
1 gaacagtgtc cccaaaagcg ccaagatgca gccatggctc tggctggtct tcagtatgaa
61 gctggcagct ctctggagca gctctgccct cattcagacc ccttcgtccc tgctggttca
121 aaccaaccat acggcaaaga tgtcctgtga ggttaaaagc atctctaagt taacaagcat
181 ctactggctg cgggagcgcc aggaccccaa ggacaagtac tttgagttcc tggcctcctg
241 gagttcttcc aaaggagttt tgtatggtga aagtgtggac aagaaaagaa atataattct
301 tgagtcttca gactcaagcc ggccctttct cagtatcatg aatgtgaagc cagaggacag
361 tgacttctac ttctgcgcga cggttgggag ccccaagatg gtctttggga cagggacgaa
421 gctgactgtg gttgatgtcc ttcctacaac tgccccaacc aagaagacta ccctgaagat
481 gaagaagaag aagcaatgcc cgttccccca cccagagacc cagaagggcc tgacatgcag
541 ccttaccacc ctcagcctgc tggtagtctg catcctgctt ctgctggcat tcctcggagt
601 ggccgtctac ttttactgtg tgcggaggag agcccgaatt cacttcatga aacagtttca
661 caaatgatca gcgcccacaa cactgatagc ctgctagcaa taaaaggact gtaactcaat
721 caaagcaaga tctggactag tgagagacag cgcattcagg actggagagg cccttgccct
781 tgctcaagct gcctgctttg aactgctgca agctctgtgt gtggtttggg gtctcacaag
841 gaaggcctca gaacccaagc tcacgcacag agtggctgaa gaaccaagaa ctcccacgcc
901 accatgtact cttcttggac tgggccttgg acagtggcct tccagccact gtctttgtca
961 gttgcttggt aggacagcct tattgactct ttggcctttc atggaaaaga gctagccggg
1021 cagccctgga gaagactgca aatcctcaca cagagaagcc acctcatgaa taaggtttcc
1081 tgcaaacagt ttctgggctc tcagcagcca tcttactttc tcaggccttg ccgtgggttt
1141 gggaggccgt tggctcagga gacagacttc tacttcatct cctagtagga agtttcttaa
1201 gcttcacttc ttctctctcg tggcttatat atttcttctc tcactctctg cccttttaat
1261 gaaaatgttt tggctataaa aataaagtcc tgccgggcat ggtggtgcat gcctttaatc
1321 ccagcactca ggaggcagag gcaggcggat ctctgagttc gaggccagcc tggtctacag
1381 agtgagttcc aggacagcca aggctacaga gaaaccctgt ctcaaaaaaa cacaaaaac
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