LOCUS AK151601 1133 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:I830032B16 product:CD48 antigen, full
insert sequence.
ACCESSION AK151601
VERSION AK151601.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1133)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by David A. Hume ( Depts. of Biochemistry
and Microbiology/Parasitology Institute for Molecular Bioscience
University of Queensland Brisbane,Q 4072 Australia ) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I830032B16
FEATURES Location/Qualifiers
source 1..1133
/cell_type="macrophage"
/clone="I830032B16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I830032B16"
/db_xref="MGI:3568749"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="bone marrow"
CDS 31..753
/codon_start=1
/note="CD48 antigen (MGD|MGI:88339 GB|AK084984, evidence:
BLASTN, 99%, match=1132)"
/note="putative"
/protein_id="BAE30541.1"
/transl_table=1
/translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIH
KDPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKED
KGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDY
TWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSS
GVCWTATWLVVTTLIIHRILLT"
regulatory 1113..1118
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1133
/note="putative"
BASE COUNT 348 a 253 c 218 g 314 t
ORIGIN
1 gagtgttctg gggaagcttc tctaagtatt atgtgcttca taaaacaggg atggtgtctg
61 gtcctggaac tgctactgct gcccttggga actggatttc aaggtcattc aataccagat
121 ataaatgcca ccaccggcag caatgtaacc ctgaaaatcc ataaggaccc acttggacca
181 tataaacgta tcacctggct tcatactaaa aatcagaaga ttttagagta caactataat
241 agtacaaaga caatcttcga gtctgaattt aaaggcaggg tttatcttga agaaaacaat
301 ggtgcacttc atatctctaa tgtccggaaa gaggacaaag gtacctacta catgagagtg
361 ctgcgtgaaa ctgagaacga gttgaagata accctggaag tatttgatcc tgtgcccaag
421 ccttccatag aaatcaataa gactgaagcg tcgactgatt cctgtcacct gaggctatcg
481 tgtgaggtaa aggaccagca tgttgactat acttggtatg agagctcggg acctttcccc
541 aaaaagagtc caggatatgt gctcgatctc atcgtcacac cacagaacaa gtctacattt
601 tacacctgcc aagtcagcaa tcctgtaagc agcaagaacg acacagtgta cttcactcta
661 ccttgtgatc tagccagatc ttctggagta tgttggactg caacttggct agtggtcaca
721 acactcatca ttcacaggat cctgttaacc tgacaagaac tcttctcacc caagaaggca
781 acttggaagc acagagtctt gccttcatcc ctagcagtgt tcctagccag cgaagcaact
841 ctggctctat tggacaaagg aaaatgtgtt actgaacgtc tgcgagagtt tgcatgcatg
901 ctctatgaaa caagcacagg accttgtaca gtgctccacc actgacctgt gtgcccagtc
961 ctttacaaag atttcaaatc agccttttaa aaactgtgca taatatctaa ttttatatac
1021 cctagttgtt tcccaacata tattaaagat aaatgcattc tttttaccaa aatgtgacta
1081 tattattttc atgttttcat atctcttttt aaaataaatt cttttaaaaa act
//