LOCUS AK150171 3050 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length
enriched library, clone:G530141J16 product:unclassifiable, full
insert sequence.
ACCESSION AK150171
VERSION AK150171.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3050)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by David A. Hume ( Depts. of Biochemistry
and Microbiology/Parasitology Institute for Molecular Bioscience
University of Queensland Brisbane,Q 4072 Australia ) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G530141J16
FEATURES Location/Qualifiers
source 1..3050
/cell_type="macrophage"
/clone="G530141J16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G530141J16"
/db_xref="MGI:3561410"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="bone marrow"
misc_feature 1..3050
/note="putative"
/note="unclassifiable"
BASE COUNT 1074 a 639 c 704 g 633 t
ORIGIN
1 gccctggggt ttgtctccag cactgcaaac aagggcaaag accatctcgc taattaatgc
61 tcctcatttc aaaaatctga agtaaaacac taacacaatt cagctggctc taatgaggac
121 atgagaagtg ggtttgtcct ggaaatggat ccacggttct gcagaggaaa atagattaat
181 gtaatctatc acatggcaca acgagaagca aaggcaatac ataaaactca acactggttc
241 ataataaaat cacgcatgct ggtaatgagg gaaatgggat gccgatgcta agccaatgat
301 aaacatcata actaaccacg caggcgcaga agcagtccca taaaaatgga catgtgtttc
361 ttgcctctgt tctgcaggta gaaaacccgg ggctgagatg atgaaagcca cagacgagag
421 ggatgtgcac aggagaccag gaactcaaat agcgctcaag cagaggagac ctgattgctc
481 attctcctcc ccaaccttag aagaccagca taccaaaaat tactggcatc ccccaccagc
541 aactgggaac tgcagaagtt aaaatcatta tggggtaccc tggcacatct aggaggtggt
601 atgcatgcta cttacttttt gaatgtatta tccactactg taaaacatga gagaaagcct
661 acataagtgg agattccatg tttacataac atgttcccac caacaccagt gtgctacatc
721 aatatgtttc tcacttaaat gccagggagt ctctgaaact tggtacattc ccagaagttc
781 aagtcaggta gcaaagagcc tagaacagct aagaaaaatg tttgtaaagc agacaaatgg
841 aagagcttga agctcaactc cataggctgt tgccaaaaac gtaacttttc ctcaactgga
901 aaagccatgc cttccttcat gctctcacct aggcacacat gtttctaatt ctattcaggg
961 tcaaaccctg ctctccaatt tgagagcaga acagtattaa cccaacacaa tggtgattgg
1021 ttgtggcttc ccttccagtg ggtggcacat gagataacaa gatatactgc aatcgtggat
1081 agctattggg agccaactgt caggaggaaa aatcaagtga gtaggagagt tgcatttcag
1141 agaagaggag tgaagaaggc tctttggcca aggaaaagaa gcttgagtga ggtgcagaga
1201 gctacacagc cttcccaggt aacagaagcg acaaggagga ggaacaggat gggaagcaga
1261 atgggaggga ttgtatttgc ttctgaaaca cagtgagcag aagtctcatc agcaggagga
1321 aacaggtaaa caaagcagcc agcagccctg ctgtggccag tcttgttgac atggatcaca
1381 aatgtcactg caactatatg ccccaaagaa cacaccaact gaatgcataa agacttaacc
1441 ctgctgtgat gtaaccagga aactgaagta gaagagatgg aggagaggta gcctggcatc
1501 ctccaggatg aggtagacac ctcttgggaa agtctgtgtt atgactgtgt agccagaaca
1561 gccagggtgc attctgggtt gtcaggtcca gatgtcatga ccagaaactc tgagctcctg
1621 taagctaagc agccggggag gtgctctgtg taggactaag tggatctttt acgtgaccaa
1681 ggggaaatga gggacaccta ctaaaaggtg ctgagactgt ccccatatca aaataagtca
1741 gaatcacacc tcagacttca ggacctcaag ctcctagact gttcaaaatg tcatgaaaaa
1801 agtaaaactg atataacatt ttagagaaaa aataaggaat aattattgtt tgggaattat
1861 ttaaatgtag gaactaattg cttaaatgaa aagcacaaca caactcaaaa atttaaaaaa
1921 tgagtcgaga gtgatggcgc acgcctttaa tccccgagct caggaggcag aggaggtaga
1981 tcccagtgag cttgagacca gcacggtcta caaagcaagt tccaggacag tagagctgtt
2041 atacacagaa aaccccgttg aaagagagag agagagagag agagagagag agagagagag
2101 agagagagta ggaaggaaga aagagagaaa gaaaaagaga gaaaaataaa agaaaaaaag
2161 aagaaaagaa aaagaaagat aatttaacaa ataaattact atttaaaatt aaggagaacc
2221 tactactacc actttcccaa attagtataa tccttaactg catcctaagt acttaccctc
2281 atacccacag ttaccctcat caatgaagcc ctccttcaca ccagcaggaa aaggtcacta
2341 cagaaacact actggtcaga atgtagaaaa tacccagtga agagtaccca gttaatacat
2401 ctatggcaca acccttatat tctctgttcc taaaaggtca gagagcatca agaagggaac
2461 gaaagatgga aagagccaga aaaccaggaa gtcgggacca gacttagaca taacaggaaa
2521 actgttccca tgaaatctca acaatatggc tgctgaaaga agacctggac aatgactcca
2581 ccagttgaca tgccaacatg gatggagtct cagtcccctc ccaaccagat gaaggactat
2641 aggcaattaa aacttgctag aattttcctg tgaaacaaga actcatgaac aaattcagaa
2701 gacaaacatc taggagatag cgggccaaat taccccaggc aactgtgaaa gagttagtgt
2761 actggaccta catagaacct cccagccaat cagaagtaag catgtctgtt atccagataa
2821 atgatgtgaa aaagcaaagg gcagaaaggc agaacaccca gtcctgttta tgacaagccc
2881 acagcagctg tggacaatca aggaaacgct tcataaatgg ctgcctcgtc actcaacacc
2941 cagcagctta gcccgaatca aagggtctcc aacaaaaggg gtagccagga agtggaggag
3001 caagaaaatt cccagatgta gcaggggatt cagagcccca ggattgctgg
//