LOCUS AK146173 1189 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
clone:I730029E07 product:CD48 antigen, full insert sequence.
ACCESSION AK146173
VERSION AK146173.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1189)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I730029E07
FEATURES Location/Qualifiers
source 1..1189
/cell_line="TIB-55 BB88"
/clone="I730029E07"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I730029E07"
/db_xref="MGI:3566591"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="BALB/C"
CDS 87..809
/codon_start=1
/note="CD48 antigen (MGD|MGI:88339 GB|AK084984, evidence:
BLASTN, 99%, match=1170)"
/note="putative"
/protein_id="BAE26952.1"
/transl_table=1
/translation="MCFRKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIH
KDQLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENDGALHISNVRKED
KGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDY
TWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSS
GVCWTATWLVVTTLIIHRILLT"
regulatory 1169..1174
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1189
/note="putative"
BASE COUNT 357 a 269 c 232 g 331 t
ORIGIN
1 gcggttttgc ttcctgattg aagggcaggc gccctgcctt ctcttacagt tgtctcaagt
61 gtttcgggga agcttctcta agtattatgt gcttcagaaa acagggatgg tgtctggtcc
121 tggaactgct actgctgccc ttgggaactg gatttcaagg tcattcaata ccagatataa
181 atgccaccac cggcagcaat gtaaccctga aaatccataa ggaccaactt ggaccatata
241 aacgtatcac ctggcttcat actaaaaatc agaagatttt agagtacaac tataatagta
301 caaagacaat cttcgagtct gaatttaaag gcagggttta tcttgaagaa aacgatggtg
361 cacttcatat ctctaatgtc cggaaagagg acaaaggtac ctactacatg agagtgctgc
421 gtgaaactga gaacgagttg aagataaccc tggaagtatt tgatcctgtg cccaagcctt
481 ccatagaaat caataagact gaagcgtcga ctgattcctg tcacctgagg ctatcgtgtg
541 aggtaaagga ccagcatgtt gactatactt ggtatgagag ctcgggacct ttccccaaaa
601 agagtccagg atatgtgctc gatctcatcg tcacaccaca gaacaagtct acattttaca
661 cctgccaagt cagcaatcct gtaagcagca agaacgacac agtgtacttc actctacctt
721 gtgatctagc cagatcttct ggagtatgtt ggactgcaac ttggctagtg gtcacaacac
781 tcatcattca caggatcctg ttaacctgac aagaactctt ctcacccaag aaggcaactt
841 ggaagcacag agtcttgcct tcatccctag cagtgttcct aaccagcgaa gcaactctgg
901 ctctattgga caaaggaaaa tgtgttactg aacgtctgcg agagtttgca tgcatgctct
961 atgaaacaag cacaggacct tgtacagtgc tccaccactg acctgtgtgc ccagtccttt
1021 acaaagattt caaatcaacc ttttaaaaac tgtgcataat atctaatttt atatacccta
1081 gttgtttccc aacatatatt aaagataaat gcattctttt taccaaaatg tgactatatt
1141 attctcatgt tttcatatct ctttttaaaa taaattcttt taaaaaact
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