LOCUS AK143968 982 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:F530008M22 product:hypothetical protein, full
insert sequence.
ACCESSION AK143968
VERSION AK143968.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 982)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new
genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F530008M22
FEATURES Location/Qualifiers
source 1..982
/clone="F530008M22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F530008M22"
/db_xref="MGI:3552484"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="kidney"
CDS 611..847
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAE25638.1"
/transl_table=1
/translation="MVPFPVSALVWPLMAAVVFLLAWPCPPAPLFFSDRWKIEGTAVG
FSRRCWSSSLLEKLSLVKCSLQRNEYLVGVQLSL"
polyA_signal 957..962
/note="putative"
polyA_site 982
/note="putative"
BASE COUNT 232 a 255 c 252 g 243 t
ORIGIN
1 gaggaagaac tgcaaaccca ggcactacca atcctgtgac atgcaagatt cctgagttgt
61 gcagtgacac ttggcaagcg aaaggagacc caagactaca ggactctctg atggtctgct
121 gctgaacaat gaccactgag agcaagcaca ggaaatgtgg agcccagaga gacctgacac
181 acagcaggag aacctctcct attcagccct ctttcggtcc atgggctcac gagggacaga
241 cggcctctct cgcgtgtgct tggaggagaa actatatgaa tgaagtgagc caatgaactt
301 gcaagctcca gatcccggag gtgtgaagtc gtccatagaa atgccgctct tgtctgcccc
361 ctcagcgtcg gtggaggaag aggccttctg gtggtcagcc tctgtagcag acgcttgtgc
421 ctcttcctgg cctctggcca atggggcagc cgggtcatct cctggagttt tttccagaga
481 ctgaccctgc tcctggctga cagcacctgg ggtgaccttg ggggctgcat catcttgtgg
541 agaagctcgc ttcaactttc gggactctgg cttggccatc aagttatcac ttgaagacag
601 tgaagatcct atggttcctt tccctgtctc tgcgcttgtg tggcccctca tggccgctgt
661 ggtctttctc ctagcatggc catgtcctcc agcccccctc ttcttctctg acaggtggaa
721 aatagagggt acagccgtgg gcttcagcag gcgatgctgg tcctccagtc ttttggagaa
781 gctgtctttg gtaaaatgct cactacagag gaatgaatac ttagtcgggg tccaattatc
841 cctctgaaca gcttttaacc actggatcag tcgtttggag tcctttaggg gaaaccttca
901 agacaaatga caaagtactt agaaatattg acatgcattc ttctaaaact atcatcaata
961 aaagcaaatc aagtatttct gc
//