LOCUS AK143605 1328 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate spleen cDNA, RIKEN full-length
enriched library, clone:F420015N21 product:CD79A antigen
(immunoglobulin-associated alpha), full insert sequence.
ACCESSION AK143605
VERSION AK143605.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1328)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F420015N21
FEATURES Location/Qualifiers
source 1..1328
/clone="F420015N21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F420015N21"
/db_xref="MGI:3551896"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spleen"
CDS 13..675
/codon_start=1
/note="CD79A antigen (immunoglobulin-associated alpha)
(MGD|MGI:101774 GB|BC027633, evidence: BLASTN, 99%,
match=985)"
/note="putative"
/protein_id="BAE25458.1"
/transl_table=1
/translation="MPGGLEALRALPLLLFLSYACLGPGCQALRVEGGPPSLTVNLGE
EARLTCENNGRNPNITWWFSLQSNITWPPVPLGPGQGTTGQLFFPEVNKNHRGLYWCQ
VIENNILKRSCGTYLRVRNPVPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFR
KRWQNEKFGVDMPDDYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGNLHIGDAQLE
KP"
BASE COUNT 302 a 421 c 307 g 298 t
ORIGIN
1 gactgggaga cgatgccagg gggtctagaa gccctcagag ccctgcctct cctcctcttc
61 ttgtcatacg cctgtttggg tcccggatgc caggccctgc gggtagaagg gggtccacca
121 tccctgacgg tgaacttggg cgaggaggcc cgcctcacct gtgaaaacaa tggcaggaac
181 cctaatatca catggtggtt cagccttcag tctaacatca catggccccc agtgccactg
241 ggtcctggcc agggtaccac aggccagctg ttcttccccg aagtaaacaa gaaccacagg
301 ggcttgtact ggtgccaagt gatagaaaac aacatattaa aacgctcctg tggtacttac
361 ctccgcgtgc gcaatccagt ccctaggccc ttcctggaca tgggggaagg taccaagaac
421 cgcatcatca cagcagaagg gatcatcttg ctgttctgtg cagtggtgcc agggacgctg
481 ctgctattca ggaaacggtg gcaaaatgag aagtttgggg tggacatgcc agatgactat
541 gaagatgaaa atctctatga gggcctgaac cttgatgact gttctatgta tgaggacatc
601 tccaggggac tccagggcac ctaccaggat gtgggcaacc tccacattgg agatgcccag
661 ctggaaaagc catgactgac atgtcccacc cttccctgcc tgccatatgt ctgactccag
721 catccctgcc tccccactct tcccctggag tccccccttc ccagtgcttg ctccagccac
781 tcgagtggcc tacccttgcc tccaggctgc cccaccctat tctcccacct aatcttgtcc
841 ttccccaagt ccagctccct ctctagtggg taatgagccc ttaatcgctg cctctagggg
901 agctgattac agcagcctcg ttagtgtcac cccccctcct cccagatctg tcatggccac
961 ttaagtgata ataaatcctt cccaaagcag cccttggcag gagtcatgga tctcatgtag
1021 actgctcctc aacactgcca gggaaccagg agcagaaaac ccaagtcccc tcccccctca
1081 gacccaggat tctaggttca agttctcacc tgaccacttc tgagatctgg gaccagacag
1141 ttcttgctgt ctgtcttccc caaccccctc cccccaaaat aacaggaagt ctcttgggga
1201 agtccccacc ccaattgaaa tgctggttta tctcccttat agggcctcac cctcctcatg
1261 tcccaaagca agggggaacc agcccgggtg ttaccaaatt tttacctata tttaaactct
1321 gagaacac
//