LOCUS AK143573 1193 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate spleen cDNA, RIKEN full-length
enriched library, clone:F420006D16 product:CD79B antigen, full
insert sequence.
ACCESSION AK143573
VERSION AK143573.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1193)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F420006D16
FEATURES Location/Qualifiers
source 1..1193
/clone="F420006D16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F420006D16"
/db_xref="MGI:3551841"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spleen"
CDS 47..733
/codon_start=1
/note="CD79B antigen (MGD|MGI:96431 GB|NM_008339,
evidence: BLASTN, 100%, match=1190)"
/note="putative"
/protein_id="BAE25444.1"
/transl_table=1
/translation="MATLVLSSMPCHWLLFLLLLFSGEPVPAMTSSDLPLNFQGSPCS
QIWQHPRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSV
YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKDGI
ILIQTLLIILFIIVPIFLLLDKDDGKAGMEEDHTYEGLNIDQTATYEDIVTLRTGEVK
WSVGEHPGQE"
regulatory 1175..1180
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1193
/note="putative"
BASE COUNT 297 a 335 c 303 g 258 t
ORIGIN
1 ggtttcgccc ccaaacctcc ttgggctcag agacagagca gtgaccatgg ccacactggt
61 gctgtcttcc atgccctgcc actggctgtt gttcctgctg ctgctcttct caggtgagcc
121 ggtaccagca atgacaagca gtgacctgcc actgaatttc caaggaagcc cttgttccca
181 gatctggcag cacccgaggt ttgcagccaa aaagcggagc tccatggtga agtttcactg
241 ctacacaaac cactcaggtg cactgacctg gttccgaaag cgagggagcc agcagcccca
301 ggaactggtc tcagaagagg gacgcattgt gcagacccag aatggctctg tctacaccct
361 cactatccaa aacatccagt acgaggataa tggtatctac ttctgcaagc agaaatgtga
421 cagcgccaac cataatgtca ccgacagctg tggcacggaa cttctagtct taggattcag
481 cacgttggac caactgaagc ggcggaacac actgaaagat ggcattatct tgatccagac
541 cctcctcatc atcctcttca tcattgtgcc catcttcctg ctacttgaca aggatgacgg
601 caaggctggg atggaggaag atcacaccta tgagggcttg aacattgacc agacagccac
661 ctatgaagac atagtgactc ttcggacagg ggaggtaaag tggtcggtag gagagcatcc
721 aggccaggaa tgagggtcac cttcatcctg ctcaactctt gggcctcact gcttccaaac
781 cgcctggctc acaagcccat tccctgcttc ctggataccc cggccagcgt ctgaagctgg
841 accatcaata ccacctctca ttctagcccc tggtccccag ctcttgctga agggcctggg
901 gtggaaggac aatagggtgg tgacatggag taaggagttc tctggggata gacttgaccc
961 aaggcttctg ggagtgccat gtgggatctg tccccatgtt tgggacagga aagcagagac
1021 ttgttggaat ctgcaaatgg actcagaaca cactggcttc aagaggagtc taggaggacc
1081 atggttcaca ctgacacctg aagaagttgc cagaatgcca tttctctctc ccattccaag
1141 gatcacccaa agcctacagc ccatcctcct gtggaataaa taatgtgcct ggc
//