LOCUS AK142726 1353 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate heart cDNA, RIKEN full-length
enriched library, clone:D830029C15 product:NADH dehydrogenase 6,
mitochondrial, full insert sequence.
ACCESSION AK142726
VERSION AK142726.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE mitochondrion Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1353)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D830029C15
FEATURES Location/Qualifiers
source 1..1353
/clone="D830029C15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D830029C15"
/db_xref="MGI:3549962"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organelle="mitochondrion"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="heart"
CDS <1..1160
/codon_start=3
/note="NADH dehydrogenase 6, mitochondrial
(MGD|MGI:102495 GB|BC055066, evidence: BLASTN, 99%,
match=1353)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE25175.1"
/transl_table=2
/translation="KSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFHPL
TTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHL
AFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALTG
MPFLTGFYSKDLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPL
ISINENDPDLMNPIKRLAFGSIFAGFVISYNIPPTSIPVLTMPWFLKTTALIISVLGF
LIALELNNLTMKLSMNKANPYSSFSTLLGFFPSIIHRITPMKSLNLSLKTSLTLLDLI
WLEKTIPKSTSTLHTNMTTLTTNQKGLIKLYFMSFLINIILIIILYSINLE"
BASE COUNT 480 a 391 c 129 g 353 t
ORIGIN
1 gaaaatcagc acaatttggc ctccacccat gactaccatc agcaatagaa ggccctacac
61 cagtttcagc actactacac tcaagtacaa tagtagttgc aggaattttc ctactggtcc
121 gattccaccc cctcacgact aataataact ttattttaac aactatactt tgcctcggag
181 ccctaaccac attatttaca gctatttgtg ctctcaccca aaacgacatc aaaaaaatca
241 ttgccttctc tacatcaagc caactaggcc tgataatagt gacgctagga ataaaccaac
301 cacacctagc attcctacac atctgtaccc acgcattctt caaagctata ctctttatat
361 gctctggctc aatcattcat agcctggcag acgaacaaga catccgaaaa ataggaaaca
421 tcacaaaaat cataccattc acatcatcat gcctagtaat cggaagcctc gccctcacag
481 gaataccatt cctaacaggg ttctactcaa aagacctaat tattgaagca attaatacct
541 gcaacaccaa cgcctgagcc ctactaatta cactaatcgc cacttctata acagctatgt
601 acagcatacg aatcatttac ttcgtaacaa taacaaaacc gcgttttccc cccctaatct
661 ccattaacga aaatgaccca gacctcataa acccaatcaa acgcctagca ttcggaagca
721 tctttgcagg atttgtcatc tcatataata ttccaccaac cagcattcca gtcctcacaa
781 taccatgatt tttaaaaacc acagccctaa ttatttcagt attaggattc ctaatcgcac
841 tagaactaaa caacctaacc ataaaactat caataaataa agcaaatcca tattcatcct
901 tctcaacttt actggggttt ttcccatcta ttattcaccg cattacaccc ataaaatctc
961 tcaacctaag cctaaaaaca tccctaactc tcctagactt gatctggtta gaaaaaacca
1021 tcccaaaatc cacctcaact cttcacacaa acataaccac tttaacaacc aaccaaaaag
1081 gcttaattaa attgtacttt atatcattcc taattaacat catcttaatt attatcttat
1141 actcaattaa tctcgagtaa tctcgataat aataaaaata cccgcaaaca aagatcaccc
1201 agctactacc atcattcaag tagcacaact atatattgcc gctaccccaa tccctccttc
1261 caacataact ccaacatcat caacctcata catcaaccaa tctcccaaac catcaagatt
1321 aattactcca acttcatcat aataattaag cac
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