LOCUS AK137271 1313 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530085C10 product:NADH dehydrogenase 6,
mitochondrial, full insert sequence.
ACCESSION AK137271
VERSION AK137271.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE mitochondrion Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1313)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9530085C10
FEATURES Location/Qualifiers
source 1..1313
/clone="9530085C10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9530085C10"
/db_xref="MGI:3540525"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organelle="mitochondrion"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="urinary bladder"
CDS <1..1120
/codon_start=2
/note="NADH dehydrogenase 6, mitochondrial
(MGD|MGI:102495 GB|BC055066, evidence: BLASTN, 99%,
match=1313)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE23289.1"
/transl_table=2
/translation="SAMEGPTPVSALLHSSTMVVAGIFLLVRFHPLTTNNNFILTTML
CLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHLAFLHICTHAFFK
AMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALTGMPFLTGFYSKDL
IIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLISINENDPDLMN
PIKRLAFGSIFAGFVISYNIPPTSIPVLTMPWFLKTTALITSVLGFLIALENNLTMKL
SMNKANPYSSFSTLLGFFPSIIHRITPMKSLNLSLKTSLTLLDLIWLEKTIPKSTSTL
HTNMTTLTTNQKGLIKLYFMSFLINIILIIILYSINLE"
BASE COUNT 467 a 378 c 124 g 344 t
ORIGIN
1 atcagcaata gaaggcccta caccagtttc agcactacta cactcaagta caatagtagt
61 tgcaggaatt ttcctactgg tccgattcca ccccctcacg actaataata actttatttt
121 aacaactata ctttgcctcg gagccctaac cacattattt acagctattt gtgctctcac
181 ccaaaacgac atcaaaaaaa tcattgcctt ctctacatca agccaactag gcctgataat
241 agtgacgcta ggaataaacc aaccacacct agcattccta cacatctgta cccacgcatt
301 cttcaaagct atactcttta tatgctctgg ctcaatcatt catagcctgg cagacgaaca
361 agacatccga aaaataggaa acatcacaaa aatcatacca ttcacatcat catgcctagt
421 aatcggaagc ctcgccctca caggaatacc attcctaaca gggttctact caaaagacct
481 aattattgaa gcaattaata cctgcaacac caacgcctga gccctactaa ttacactaat
541 cgccacttct ataacagcta tgtacagcat acgaatcatt tacttcgtaa caataacaaa
601 accgcgtttt ccccccctaa tctccattaa cgaaaatgac ccagacctca taaacccaat
661 caaacgccta gcattcggaa gcatctttgc aggatttgtc atctcatata atattccacc
721 aaccagcatt ccagtcctca caataccatg atttttaaaa accacagccc taattacttc
781 agtattagga ttcctaatcg cactagaaaa caacctaacc ataaaactat caataaataa
841 agcaaatcca tattcatcct tctcaacttt actggggttt ttcccatcta ttattcaccg
901 cattacaccc ataaaatctc tcaacctaag cctaaaaaca tccctaactc tcctagactt
961 gatctggtta gaaaaaacca tcccaaaatc cacctcaact cttcacacaa acataaccac
1021 tttaacaacc aaccaaaaag gcttaattaa attgtacttt atatcattcc taattaacat
1081 catcttaatt attatcttat actcaattaa tctcgagtaa tctcgataat aataaaaata
1141 cccgcaaaca aagatcaccc agctactacc atcattcaag tagcacaact atatattgcc
1201 gctaccccaa tccctccttc caacataact ccaacatcat caacctcata catcaaccaa
1261 tctcccaaac catcaagatt aattactcca acttcatcat aataattaag cac
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