LOCUS AK134885 2486 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male olfactory brain cDNA, RIKEN full-length
enriched library, clone:6430508A06 product:Ig delta chain C region
membrane-bound form, full insert sequence.
ACCESSION AK134885
VERSION AK134885.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2486)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6430508A06
FEATURES Location/Qualifiers
source 1..2486
/clone="6430508A06"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6430508A06"
/db_xref="MGI:3536747"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="olfactory brain"
CDS 646..1560
/codon_start=1
/note="Ig delta chain C region membrane-bound form
(UniProt|P01882, evidence: FASTY, 98.3%ID, 100%length,
match=874)"
/note="putative"
/protein_id="BAE22328.1"
/transl_table=1
/translation="MSGAQGPRSPSPQVMKRDLTCSSSQSAKPPEENEKINLGCLVIG
SQPLKISWEPKKSSIVEHVFPSEMRNGNYTMVLQVTVLASELNLNHTCTINKPKRKEK
PFKFPESWDSQSSKRVTPTLQAKNHSTEATKAITTKKDIEGAMAPSNLTVNILTTSTH
PEMSSWLLCEVSGFFPENIHLMWLSVHSKMKSTNFVTANPTPQPGGTFQTWSVLRLPV
ALSSSLDTYTCVVEHEASKTKLNASKSLAISGIVNTIQHSCIMDEQSDSYMDLEEENG
LWPTMCTFVALFLLTLLYSGFVTFIKVK"
regulatory 2468..2473
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2486
/note="putative"
BASE COUNT 702 a 613 c 579 g 592 t
ORIGIN
1 ggaggaagta gagaggcttg agaaatctga ggaagaaaag agtagatctg agaggaaagg
61 tagctttctg gaggtcagga gacagtgcag agaagaacga gttactgtgg acaggtctta
121 gatggggaaa gaatgagcaa atgcaagcat cagaagggtg gatgcaatgt cctgccaagg
181 acttaccaag aggatccccg gacagagcag gcaggtggag ttgactgaga ggacaggata
241 ggtgcaggtc cctctcttgt ttcctttctc cttctcctgt ttccttcttc tcttgtcaca
301 ggtctcacta tgctagccaa ggctagcctg aaagattacc atcctacaga tgggcccatc
361 cagttgaatt aaggtggaga tctctccaaa catctgagtt tctgaggctt ggatgccact
421 ggggacgcca agggactttg ggatgggttt ggttggcccc agatgaaggg ctacttcact
481 gggtctataa ttactctgat gtctaggacc agggggctca ggtcactcag gtcaggtgag
541 tcctgcatct ggggactgtg gggttcaggt ggcctaaggc aggatgtgga gagagtttta
601 gtataggaac agaggcagaa cagagactgt gctactggta cttcgatgtc tggggcacag
661 ggaccacggt caccgtctcc tcaggtaatg aaaagggacc tgacatgttc ctcctctcag
721 agtgcaaagc ccccagagga aaatgaaaag ataaacctgg gctgtttagt aattggaagt
781 cagccactga aaatcagctg ggagccaaag aagtcaagta tagttgaaca tgtcttcccc
841 tctgaaatga gaaatggcaa ttatacaatg gtcctccagg tcactgtgct ggcctcagaa
901 ctgaacctca accacacttg caccataaat aaacccaaaa ggaaagaaaa acctttcaag
961 tttcctgagt catgggattc ccagtcctct aagagagtca ctccaactct ccaagcaaag
1021 aatcactcca cagaagccac caaagctatt accaccaaaa aggacataga aggggccatg
1081 gcacccagca acctcactgt gaacatcctg accacatcca cccatcctga gatgtcatct
1141 tggctcctgt gtgaagtatc tggcttcttc cccgaaaata tccacctcat gtggctgagt
1201 gtccacagta aaatgaagtc tacaaacttt gtcactgcaa accccacccc ccagcctggg
1261 ggcacattcc agacctggag tgtcctgaga ctaccagtcg ctctgagctc atcacttgac
1321 acttacacat gtgtggtgga acatgaggcc tcaaagacaa agcttaatgc cagcaagagc
1381 ctagcaatta gtggcatagt caacaccatc caacactcgt gtatcatgga tgagcaaagt
1441 gacagctaca tggacttaga ggaggagaac ggcctgtggc ccacaatgtg caccttcgtg
1501 gccctcttcc tgctcacact gctctacagt ggcttcgtca ccttcatcaa ggtgaagtag
1561 accaggacag cagaatcctg caactacaga gaaaagtgct ttccctcaac atgaagccaa
1621 ctaagaagat accttctatg cagagagaaa tgccaaggcc ctcctctcaa tacctgctct
1681 ccacctagac tcccagactc aaaatgccta gtatccttgg ctataggcaa agcaggtgtt
1741 ctgctgctcc agccctactc atcgatgtcc cctgcctccc cccaagccct catcattcca
1801 taagcatgct gtggtctacc ccacctgcct cctggtaatt tgtttgtttg tttgtttgtt
1861 tgtttctgtg atctaaataa actcaaacca catgagatct gaggaaaaca gtggagaagc
1921 cactagggag gggtatcaga gtcacactga agaaaattgt tcagtgaact aagaaactct
1981 cctcccacct taaactctca gttgacttct cacatacaca taagcatata cacatgcaca
2041 tgtgcacatc acagtcacat gcatgataac acaggcagac gtgcatgagt gcacatgcat
2101 acctactcag atgcacataa atttacagca gagccttagg tgacaggaat ggggactgtg
2161 gtcatttgaa taagaacccc ataggctcat atagttgaat gcttagtcac cagggagtgg
2221 aactctttaa caggatcaga aagattcaga ggcaagtcct tgttgtagga agtgtgtgtc
2281 actggagcac gggtaggctt tcaggtttca aaagttcatg tcaggactag agtctctctg
2341 tcactctgtg tctctatatc tcttctgaat tctaggtaat ttctccagca ctatgtccac
2401 tggcatacca ccatgctccc taccatgatg taaatgaact aacccctgaa actgttagca
2461 agcctcaatt aaatgctttc ttttat
//