LOCUS AK132809 1290 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930412E16 product:hypothetical protein, full
insert sequence.
ACCESSION AK132809
VERSION AK132809.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1290)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4930412E16
FEATURES Location/Qualifiers
source 1..1290
/clone="4930412E16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4930412E16"
/db_xref="MGI:3533953"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
CDS 48..623
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAE21370.1"
/transl_table=1
/translation="MKRCFKKITQDRTSEEATLSCSQSPVADALNLCEPSVEGGLMSS
RLSRDIPVHETEVSTTAACSQRKPISRASKQLRPCQDLSALGEDTSESASLIQRPPQK
RQSRNSSLPKVLHKTRRGKRDPKKLAAAMERVRQWESRLLQNLEEATQHQLTVETEKK
EPVIQLNTDQPDATSEGHTGHRHLLFWTHDH"
regulatory 1268..1273
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1290
/note="putative"
BASE COUNT 370 a 297 c 292 g 331 t
ORIGIN
1 ggcagtttcc tacgttgaac tctgggtagg agagctcggt tttcctgatg aagcgatgct
61 ttaaaaaaat cacacaagac aggacttccg aggaagctac ccttagctgt agccaaagcc
121 ctgtagcaga cgccctgaac ctctgtgaac cgagtgtgga aggtggacta atgtcttcac
181 gcctttcccg ggatatccct gttcatgaga cagaggtcag caccacagct gcctgtagcc
241 aaaggaagcc catttccagg gcttccaagc agttaaggcc ctgccaggac ctctcagctc
301 ttggggaaga tacctctgag tcggcctcat tgatccaacg gccaccgcag aagcgacagt
361 ctcgaaactc atccttaccc aaggttctcc acaaaacccg caggggaaag cgagacccca
421 agaagctggc agctgccatg gagcgggtga ggcagtggga aagtcgcctt ctccagaacc
481 ttgaggaagc cacgcagcac cagctcacgg ttgaaaccga gaaaaaggaa ccagtgatcc
541 agctcaatac agatcagcca gacgccacct ccgagggtca cacaggccat agacatttgc
601 tattttggac acatgaccac taaatataaa gctagcgtta ctcttaaatg tttgtaccac
661 ctactttatc aaaaaaaaaa agtttgttct tttattgtaa aaatgtaaag atccttgcct
721 tcagccccat ccatccctcc tgttttaccc acctcttctt caggcacaag gacatgcgtg
781 ctggctcttc tcagagaggc agctaaaagc ttgttggtag agtggaatca gcagttactg
841 ggtgaaactg agaactgagt tggaaaaaca gtattgacta gatgccaagg gcacataagg
901 tctaagatgc tctaagaggc aggtgagaag gtttattttt aagcttcagt ttgggcggaa
961 aatatttctt ccagtttgtg tcagaattga aggcattttt ttggagagtt cccaaccttc
1021 agaaaaatca ggaaatctac tgcaaataga tgcaggctgg cagcagcagc cattgggata
1081 gttcaatatt tcatctaccc cagttctgtg tgtggtagga atttactgtg taggatgttt
1141 tagcatttgt atctgatgaa cttcccccta tgtaagtgga ctattcagtt ggctcatttt
1201 tttcttgtaa ttactactat gttttaaaaa taccagttat aaaaatgata agtctgttaa
1261 cttttcaaat aaaacatgaa actataaagc
//