LOCUS AK132110 1044 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched
library, clone:3110030E14 product:unclassifiable, full insert
sequence.
ACCESSION AK132110
VERSION AK132110.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1044)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=3110030E14
FEATURES Location/Qualifiers
source 1..1044
/clone="3110030E14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:3110030E14"
/db_xref="MGI:3532634"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..1044
/note="putative"
/note="unclassifiable"
BASE COUNT 285 a 234 c 294 g 231 t
ORIGIN
1 ggtctagcca cacctccagg ggtcgcttag agaaccgtcg cgacctggga tggtttagag
61 gtgtccagag gggagggaac gtcagtcatt ttcctggttt ttcacctgta gcttaaagct
121 ccactcgagc cagatcgggt tctcccgggt tgggcttgct gtgccgtagt acagatggca
181 aaaccgaggt ttgaggacag gaaaggctgg tcaggaatca caactaaggc gacttggggg
241 atcgggtaat ggcagaggtc agggatgttt gaagaagagt taatgcttag gccacggtgc
301 acttcgcagc tgtatttctt actaggactg gagggccaga cacccagctg tcctctgatc
361 agtgtaggtg tgtttagaag ttggggaatt agctcagtgg caaacacgag gccctgcgtc
421 ctattcctag catacacacg cgctcataga cgcgcatgca cgcacgcagg cagtgttagg
481 tatttttaga agtctacagt ccttgggccc agtgtggtgg tggctcatgc ttttaatcta
541 gcactccgga gaggcaggct aacctcactt gacttacata gaccgctgga gctatgtagt
601 aagtttttcc cagaaaccac atggtaaaag gagagaaccg tctcttccag gctgtccacc
661 cacctccacg cgctcttagt gtcatgtgtg cacttacaga cataacaata aatacatgct
721 taaagccggg ccctggtgct gcacgccttt gagtcctaac acttgggagg cagaggcagg
781 cggatttctg tgagtttgag gccagtctgc tctacatagt tccggaacag ccaggtctac
841 atagcgagac catatctcaa aacagaaaag agaagagaag aagaaaagaa aaaaaaaaga
901 gagaaagaaa aggaaatgga aagagccagg gagtggtggc acacaccttt aaacccagaa
961 atggaaaggc agaaacgggt ggatctctgt gagttcaaag ccagcctggt ctacagagtt
1021 agtttcagga cacaaaaacc gtgt
//