LOCUS AK131897 793 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210414C08 product:unclassifiable, full insert sequence. ACCESSION AK131897 VERSION AK131897.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 793) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2210414C08 FEATURES Location/Qualifiers source 1..793 /clone="2210414C08" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:2210414C08" /db_xref="MGI:3532113" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="stomach" misc_feature 1..793 /note="putative" /note="unclassifiable" BASE COUNT 222 a 158 c 235 g 178 t ORIGIN 1 tataaatcaa cagccaccaa aaacaacacc aggacaaagt gacttctagg tctttggtcc 61 catgaactca agagaatgga atttagagag caggaaggtg tgtttaggaa ggaattttat 121 tataagatta taaattgggg cttgagagaa gggaagagaa aggactcctg aatagaaggg 181 gtgggcccca gagtttgagg taccatcgag ctgctagcct aggggagaag aagagagaaa 241 ggcatgcctt ttttgagttg gggaccaagg aagcagtcac gttcagcatc ggaggtctgc 301 aagcagctgc acagtggagc gggacagggg ttagaagact tcagagaatg agaaagccta 361 gcctatcggg aaagcgcgct taagcctttg gcaggtgtga tggctaatct tgggtgtcag 421 cttggcacac ctgggaagaa ggcactgaaa tcaggaactg ccatcatcag attggcctgt 481 gaccacgcct gtgggggcgc attttcttga tttctaatta tgtaggaaga cccagcctac 541 cgagggctgt accgtctcta agcaggtggc ctgggctgta taagagagtt ggcggtgagc 601 ctggaagcca gcctggtgca acagtgctcc ttgtggtctc agtttcagct gtagggttcc 661 cttagggata gacggtaact tgtaagccaa ataaataaac ccctgcctcc tcccgcagct 721 ggttttcctc agtgtttgtt acagcaacag agactcgaag tgggacatca ggtgtctgaa 781 aagataaaaa ggc //