LOCUS AK131578 953 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:0610005I03 product:NADH dehydrogenase subunit 1 (EC
1.6.5.3) (NADH-ubiquinone oxidoreductase chain 1) homolog [Mus
musculus], full insert sequence.
ACCESSION AK131578
VERSION AK131578.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE mitochondrion Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 953)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=0610005I03
FEATURES Location/Qualifiers
source 1..953
/clone="0610005I03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:0610005I03"
/db_xref="MGI:3531659"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organelle="mitochondrion"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="kidney"
CDS 1..>953
/codon_start=1
/note="NADH dehydrogenase subunit 1 (EC 1.6.5.3)
(NADH-ubiquinone oxidoreductase chain 1) homolog [Mus
musculus] (UniProt|Q9G0S6, evidence: FASTY, 91.5%ID,
99.6%length, match=951)"
/note="putative"
/protein_id="BAE20699.1"
/transl_table=2
/translation="MFFINILTLLVPILIAMAFLTLVERKILGYMQLRKGPNIVGPYG
ILQPFADAMKLFMKEPMRPLTTSMSLFIIAPTLSLTLALSLWVPLPMPHPLINLNLGI
LFILATSSLSVYSILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMNGSY
SLQTLITTQEHMWLLLPAWPMAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAG
PFALFFMAEYTNIILMNALTTIIFLGPLYYINLPELYSTNFMMEALLLSSTFLWIRAS
YPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIFTAGVPPY"
BASE COUNT 307 a 249 c 110 g 287 t
ORIGIN
1 gtgttcttta ttaatatcct aacactcctc gtccccattc taatcgccat agccttccta
61 acattagtag aacgcaaaat cttagggtac atacaactac gaaaaggccc taacattgtt
121 ggtccatacg gcattttaca accatttgca gacgccataa aattatttat aaaagaacca
181 atacgccctt taacaacctc tatatcctta tttattattg cacctaccct atcactcaca
241 ctagcattaa gtctatgagt tcccctacca ataccacacc cattaattaa tttaaaccta
301 gggattttat ttattttagc aacatctagc ctatcagttt actccattct atgatcagga
361 tgagcctcaa actccaaata ctcactattc ggagctttac gagccgtagc ccaaacaatt
421 tcatatgaag taaccatagc tattatcctt ttatcagttc tattaataaa tggatcctac
481 tctctacaaa cacttattac aacccaagaa cacatatgat tacttctgcc agcctgaccc
541 atagccataa tatgatttat ctcaacccta gcagaaacaa accgggcccc cttcgacctg
601 acagaaggag aatcagaatt agtatcaggg tttaacgtag aatacgcagc cggcccattc
661 gcgttattct ttatagcaga gtacactaac attattctaa taaacgccct aacaactatt
721 atcttcctag gacccctata ctatatcaat ttaccagaac tctactcaac taacttcata
781 atagaagctc tactactatc atcaacattc ctatggatcc gagcatctta tccacgcttc
841 cgttacgatc aacttataca tcttctatga aaaaactttc tacccctaac actagcatta
901 tgtatgtgac atatttcttt accaattttt acagcgggag taccaccata cat
//