LOCUS AK121938 1441 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033107C14, full insert sequence. ACCESSION AK121938 VERSION AK121938.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1441) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1441 /clone="J033107C14" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 150..1112 /db_xref="Osa1:LOC_Os07g37010" /db_xref="RAP-DB:Os07g0556000" /note="(RAP Annotation release2) Cyclin-like domain containing protein" /note="(Rice Genome Annotation Project) CYCD6, putative, expressed" /note="mapping to R07-TIGRv4S1-000665R (Chr.7: short arm=22167828, long arm=22170028, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH00726.1" /translation="MDMATGAKEVVVVEAYEYEFDLENPFTSPADEPIASLLDAEGHH SPSVSAAASAARREAAGFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPW APRLLAISCLTLAAKMQRAAAISAADIQRGEEFMFDEAKIQRMEQMVLNALEWRTRSV TPLAFLGFFLSACFPQPRHPALLDAIKARAVDLLLRVQPEVKMAEFSPSVAAAAALLA AAGEVAGAHLLGFEAGVAACPFVNSEKLRECGEVMAAACGVGPSWAAAATSAETPVTV LGHHRSASSESERTTTVGSAANSADAKRRCMGPPRQWGVGGPDE" BASE COUNT 231 a 466 c 453 g 291 t ORIGIN 1 gagtagcact gcgtagcagc aatggtggct tcctcctcct cctcctcctc ctcctctccc 61 tctcccccat aaagccacgc accacgcgcg gttggtttct tggcgtgttc ctgggccttc 121 ctcgtactac gcggcggcgg gcggcggcca tggacatggc gacgggggcg aaggaggtgg 181 tggtggtgga ggcgtacgag tacgagttcg acctcgagaa cccgttcacc agccccgccg 241 acgagccgat cgccagcctc ctcgacgccg agggccacca ctcgccgtcc gtctccgccg 301 ccgcctccgc cgcccgccgc gaggccgccg ggttcatctc caaggtgcgg tacgacggcg 361 agctggacgt gcacccccgc gtcgcctacc tcgcgctcaa ctacgtagat cgctacctct 421 ccaagcgcca attggcctgc gagcgcaacc catgggcgcc gcggctgctc gccatcagct 481 gcctcaccct cgccgccaag atgcagcgcg ccgccgccat ctccgccgcc gacatccaga 541 ggggcgagga gttcatgttc gacgaggcga aaatccagcg catggagcag atggtgctca 601 acgcgctgga gtggcggacg cgctccgtca cgccgctcgc cttcctcggc ttctttctct 661 ccgcgtgctt cccgcagccg cggcacccgg cgctgctcga cgccatcaag gcccgcgccg 721 tcgacctcct cctccgcgtc cagccggagg tgaagatggc ggagttctcc ccctccgtgg 781 cggccgccgc ggccctcctc gcggccgccg gagaggtcgc cggcgcccac ctcctcggct 841 tcgaagctgg cgtcgccgct tgcccctttg taaatagcga gaagttgcgg gagtgcggcg 901 aggtgatggc ggcggcctgc ggcgtcgggc ccagctgggc ggcggcggcg acgagcgccg 961 agacgccggt gacggtgctc ggccaccacc ggagcgcgag ctccgagagc gagcgcacca 1021 ccaccgtcgg atcggcggcc aacagcgccg atgcgaagag gcgctgcatg ggcccacctc 1081 ggcagtgggg ggtaggcggc cctgatgagt gatgaggcaa cgtgagcgag agatagggtg 1141 acgactcgga cgacagctgg aagagctgga aatttgctct tgccctgctc tttctttcat 1201 tcacctttcc ttttctttcc gattcttttt tccctctatt ttaatctttt cgaggtaaag 1261 caggaatgga gataattggt ggtggtagct gtcattttaa ttgctttttt tgctcgtctt 1321 tttttaggct agttttgttt ttgttcagaa gtactggatg ttaagggcga tgaatatatt 1381 gtggtgagag ggagaggggg ataatgtgat attgcggaaa ataaaaaaaa tgttgttgct 1441 c //