LOCUS AK121725 1654 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033082A13, full insert
sequence.
ACCESSION AK121725
VERSION AK121725.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1654)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1654
/clone="J033082A13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1654
/db_xref="Osa1:LOC_Os09g34250"
/note="(Rice Genome Annotation Project) indole-3-acetate
beta-glucosyltransferase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000658F (Chr.9: short
arm=20221700, long arm=20223440, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 311 a 474 c 566 g 303 t
ORIGIN
1 ggagcgtatc acagttcaca aaagcagcac agagctagtc tagtggcagc catggcgagc
61 tcagagcgcg gcggcggcgg cggcatccac gtcgtcttgc tcccgtaccc gagccaaggc
121 cacatcaatc cgatcctcca gttcggcaag cgcctcgccg gccatggcgg cgtccggtgc
181 accctcgccg tgacgcggtt catcctccgc cagggcgagc cgccgtccac gggcgccgtc
241 cacgtcgccg cctactccga cggctacgac gccggcggct tccacgaggc cggcagcgcc
301 ggcgagtacc tgtcccggct ggagtcgcgc gggtcggaca ccatggacgc gctcctccgc
361 gccgaggcgg agcagggccg gccggtggac gcggtggtgt acgactcgtt cctgagctgg
421 gcgccgcgcg tggcggcgcg ccacggtgcg gcgaccgcgt ccttcttcac gcaggcgtgc
481 gcggtgaacg cggcgtacga gagcgtgttc acgggccggg tcgagctgcc gctcgccgcc
541 gacggcgagg agccgctacg gctgcccggg atttccgtcg gcctcacgct ggacgacgtg
601 ccgacgttca tggcgaacac ggaggacagc ccggcgtacc tcgacctcct ggtgaaccag
661 ttcaagggcc tggacatggc cgaccatgtc ctcgtcaact ccttctaacg agctccagcc
721 acaggaagcg gagcacatgg cgtcggcgtg gtggcccaag acggtggggc tgaccgtgcc
781 atcggcgtac ctcgacaacc gcctcccgga cgacacgtcg tacggcttcc acctcttctc
841 gccgacgacg gagacgaagg cctggctgga ggcgagacca ccgcgcaccg tggcgtacgt
901 ctccttcggc agcgtggcga cgccgagccc ggcgcagatg gccgaggtgg cggagggttt
961 gtacaacacc ggcaagccct tcctctgggt ggtgagggca tcggaaacct ccaagatacc
1021 ggaaggcttc gccgccaagg cggcgaagca agggagaggg ctcatcgtga cgtggtgccc
1081 gcagctggag gtgctggcac acccagctgt ggggtgcttc gtgacgcact gcgggtggaa
1141 ctcaacgaca gaggggttga gtgccggtgt accaatggtg gcggtaccgc agtggtcaga
1201 ccagacaatg aatgccaagt acattgagga cgtgtggcgt gttggggtgc gggtgcggcc
1261 cgacggcgag ggggtggtga ggaaggagga gttggagagg tgtgtgaggg aggtgatgga
1321 aggggagagg agcaaggagt tcatggagaa tgctaatggt tggaaggaga aggccagaaa
1381 tgccatgtgt gaaggtggca gctccgacaa aaatatcgtc gagttcatcg ctaagattgg
1441 agtggaccga aaatttaaat gattgagaca ggtggattcg tcggccattg gtcatgtttc
1501 ctttctcatt tgatttcact atcatgtttt cagatgcaat aatagtcgtt atctgtcgct
1561 ctagtctttc tttttctagt ataggatcaa atatttgcga tatctttttc ccactatatt
1621 caatgaaatg ggcacagtcg gatgccgatt cgtt
//