LOCUS       AK120969                1702 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023040M24, full insert
            sequence.
ACCESSION   AK120969
VERSION     AK120969.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1702
                     /clone="J023040M24"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1702
                     /db_xref="Osa1:LOC_Os06g22820"
                     /db_xref="RAP-DB:Os06g0334400"
                     /note="(RAP Annotation release2) Similar to
                     Cdk-activating kinase 1At (Cdk-activating kinase CAK1At)"
                     /note="(Rice Genome Annotation Project) CAK1AT, putative,
                     expressed"
                     /note="mapping to R06-TIGRv4S1-000566R (Chr.6: short
                     arm=13301562, long arm=13305575, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          418 a          492 c          434 g          358 t
ORIGIN      
        1 gtgcagccac atcgtcaaaa tcgatcatca ccaaaaaaaa agaaaaatcc ctaaattacc
       61 ctccccccaa atccccatgg cgatcggcgg cggcggcggc ggcggtagct ggagcatcca
      121 cggccgcccc gacgtcacct cccgctacga ggtcctcggc cgcgccggct cgggagccta
      181 cgccgacgtc taccgcggcc gccgccgctc cgacggcgcc cccgtcgccc tcaaggaggt
      241 ccacgacgcc gtcagcgccc gccgcgaggc cgacgccctc ctcgccgccg cgccctcccg
      301 ccacgtcgtc gccctcctcg accacttccc cggcggggac cacgacgacg acgtcctcgt
      361 cctcgagtgg ctcccgctcg acctctccgc cgtcgtccgc gccgccgccg ccgccaggcc
      421 gagcgccctc cccgccgcgc agcgcaagcg ctggatgctg caggtgctcg agggcgtcgc
      481 cgcgtgccac agcgccgggg tcgtgcaccg cgacctcaag cccgccaacc tgctcatctc
      541 cgaggacggg gtcctcaagg tcgccgacct tggccaggcc aggatacttc aggagacagg
      601 aacataccaa ggtatgcatc catatgagca aagttcagga gtggagcctt gggtttcaca
      661 acaacgagca gtgctacatg gagtgaaaga gaaccaccca tctcatgact cagaaactca
      721 aactggtcag gagccagaga gactcaccgc agctgattac ctacatgaga tggaccaact
      781 ccgggccaaa tccacacatg gagatgttga caaaatgagc ctacaggatg gggatgcctc
      841 ctgtcttgcc acatgcagca cagcagacat tgacgatgat ccatttagag cctcctattc
      901 atatgacgca gaagaaggca tgttggaaga agagtccggt gctttcactt cttgtgttgg
      961 cacacgctgg tttagagctc cagagctcct ttatgggtca acaaactatg ggcaggaggt
     1021 tgacctctgg tcactaggat gtattttggc tgaactgttt aatttagagc ctatattccc
     1081 aggcacatct gatatcgatc agattggtag aattatcagt gttctgggca acatcacaga
     1141 agaaaccttt ccaggctgtt caaatctgcc agattacaat aagattttct tcaacaaagt
     1201 cgagaagcca ataggcctcg aagcatgcct gcctgataga tctgcttctg aagttggtat
     1261 cataaagagg ctactttgct atgacccaac aaagagggcc agtgctgccg acttgctgaa
     1321 tgatccatac ttcgccgaag aaccattacc tgtacctatt gaaggattac aagtcccaga
     1381 atcaaaggat gaagatgatg acagcacaga agaatgggct aatttgaggg gtggagattc
     1441 agattcagac ttcgatgaat tcggcagcat ggatgtcacc aagaccgaca agggtttcag
     1501 catacgcttc tcgtgatcaa gaatgattga tgagggtaat tgtatcttcc tgaacatgct
     1561 ggcagaggaa tttctgtcgc agcatattgt atggcatttt gataattgtt ttactatttg
     1621 taaactgcga tatgttcatt atgttgtgta caacagcacc agctttcctg gtaatgagat
     1681 gaataaacta cagtctgcac ct
//