LOCUS AK120733 3207 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023003D10, full insert sequence. ACCESSION AK120733 VERSION AK120733.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3207) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3207 /clone="J023003D10" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3207 /db_xref="Osa1:LOC_Os07g20510" /db_xref="RAP-DB:Os07g0300200" /note="(RAP Annotation release2) Protein prenyltransferase domain containing protein" /note="(Rice Genome Annotation Project) auxin Efflux Carrier family protein" /note="mapping to R07-TIGRv4S1-000428F (Chr.7: short arm=11844118, long arm=11847324, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 797 a 742 c 794 g 874 t ORIGIN 1 gacagaagat cccgttcccg tgctctgttg ccaattctcc cccaccacca tgctcctcgc 61 cgcgcgcggc cgccgtcacc ccttcgccgc cgcgcgcctc cttccgatcc cgctttcctc 121 cggcccctcc ttcgcctcct ccaccaccac cacgacctcc aatggcgcct gttcgtcctc 181 cgccgcggac cccgacgccg tggccgccga ggtggccacc ctcctctccc gctgctccgg 241 cgactggagg ctcgccgtct cctcctccga cctcccctcc cgcctctccc ccgccgccat 301 ctcctccctc gtccgacgac gcccgtcccc ctcctccccg cgcctccacc ctaagctcct 361 cctcgacttc ttctactggt ccagccccca gctcgcgccg tcggcccccg cccccgatgc 421 cttcgcccac ctggccatgt ccctgtgcgc cggctcactc ttcaacctgg ccaacggcct 481 cctcatcaag atgatccgcg cctacccgtc acctcccgtc gtcctcgcct ccatccatcg 541 cgcgctatcg gattctggcc accgttcgcc ggcggtgctc gacgtcctcg tggataccta 601 caagaagtct gggagggtgc aggacgccgc ggaggtcgtc ctgatgatga gagatcgggg 661 catggctccc agcattcggt gctgcaacgc gctgttgaag gatctgctgc gcgcggacgc 721 catggctctg ctttggaagg tgcgagagtt catggttggc gctgggattt ccccggatgt 781 gtatacgtac tcgactctga tcgaagccta ctgcaaggtc cgggaatttg atactgccaa 841 gaaggtgctt gtggaaatgc gtgagagggg gtgcggcctg aacaccgtaa cctacaatgt 901 gctgattgct gggttatgca ggtctggggc tgtcgaagag gcgtttgggt tcaagaagga 961 catggaggat tatggactag ttcctgacgg gtttacctat ggcgcactca ttaatggact 1021 gtgcaagagc cgtaggtcaa atgaggcgaa ggcattgttg gacgagatgt cttgtgctga 1081 gctaaagcct aatgtcgtag tttatgccaa tctgattgat gggtttatga gggagggcaa 1141 tgcagatgag gcgtttaaga tgataaagga gatggttgct gctggtgtgc agccaaacaa 1201 aattacctat gacaatcttg ttcggggact atgtaagatg gggcagatgg acagggcttc 1261 tctacctttg aagcaaatgg tcagagatag ccataggcct gataccatca cgtacaatct 1321 cattattgaa ggacatttcc gtcatcatag caaaaaggat gcttttcggc ttcttagtga 1381 aatggagaat gctggtattt cccctaatgt atatacttat agcataatga ttcatgggct 1441 atgccaaagt ggtgaaccag aaaaggcaag tgatctcctt gaggaaatga ctacaaaagg 1501 attgaagcct aatgcatttg tttatgcgcc tcttatctca gggtactgta gagaaggtaa 1561 tgtttcattg gcatgtgaaa tttttgataa gatgacaaag gtgaatgtac tccctgattt 1621 gtactgctac aattctctta tatttggact atctaaggtg ggaagggtgg aggaatctac 1681 aaagtacttt gctcagatgc aggagagagg attgctgcca aatgaattca catacagtgg 1741 cctcattcat gggtatctaa agaatggtga tctagaaagt gctgaacagt tagtgcagcg 1801 gatgcttgac actggactaa aaccaaatga tgttatctac attgatctcc tagaaagcta 1861 ctttaagtca gatgatattg aaaaggtgtc ctctactttc aagtccatgt tagaccaggg 1921 agttatgctt gacaaccgta tctatggaat cttgattcat aatctgtcca gttctggaaa 1981 tatggaagca gcatttaggg ttctttcagg gattgagaag aatggatctg ttccggatgt 2041 gcatgtgtac agctcgttga tatcaggtct ttgcaagaca gctgacaggg aaaaagcttt 2101 tggtattctt gatgaaatgt ctaagaaggg agtagatcct aatattgtat gctataatgc 2161 cctaattgat gggctgtgca agtctggtga tatttcttat gcccgcaatg tcttcaatag 2221 catattagct aagggattag tgccaaactg tgtgacatac acaagtttga ttgatggaag 2281 ctgcaaagtt ggtgacatca gcaatgcatt ctatctttat aatgaaatgc tagcaacagg 2341 tataacacca gatgcttttg tctatagtgt acttaccact ggctgctcta gtgctggtga 2401 ccttgagcag gcaatgtttc tgattgagga aatgtttctt aggggacatg caagtatttc 2461 ttctttcaat aatttagttg atggtttctg caaacgtgga aagatgcagg aaactttgaa 2521 gttgttgcat gtgataatgg gcaggggcct agtacctaat gccctgacta ttgaaaacat 2581 catcagtgga cttagtgagg ctggaaaact cagtgaagtg cacacaattt ttgttgagtt 2641 gcagcagaaa acttcagaaa gcgctgcccg ccacttttcc tcattgttta tggacatgat 2701 aaatcaagga aaaattcctc ttgatgtggt tgatgacatg attcgagatc attgtaaaga 2761 aggaaatctg gacaaggctt taatgctgcg agatgttatt gttgcgaaaa gtgcaccaat 2821 gggctgctcg tcctatcttg ctatagtgga caatctatgc cggaagggaa aattaagtga 2881 agcgttgaat ttgctgaaag aaatggacaa gagaggtatt tgtcccagtg agaatcaatg 2941 cttgatacta ttaactaatc ttcatacatc tggatatatc caagaacaca atacggtact 3001 tgataatatg ttgtgtcaca agtggttaca gaaggacagc aaattctgta attcagctgg 3061 tgataatctg gaatctgtca atgcagaata aacatagagc agaatccttc ctataaaaga 3121 aagtctgatt ctattattca tgttgcgaat gcatgtcgta gccttgtttt tgtttattga 3181 tgaggaatta aacagattaa ttttttc //