LOCUS AK120171 2682 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013032J17, full insert
sequence.
ACCESSION AK120171
VERSION AK120171.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2682)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2682
/clone="J013032J17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2682
/db_xref="Osa1:LOC_Os05g49590"
/note="(Rice Genome Annotation Project) SPA1, putative,
expressed"
/note="mapping to R05-TIGRv4S1-001085R (Chr.5: short
arm=28361948, long arm=28367898, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 773 a 517 c 631 g 761 t
ORIGIN
1 atcagccaca agcaaactgg atattgcgac ggatgatatt ttcaatacaa aaagatacct
61 tgatcccaaa gttgagtccc aagattctaa tggcgataat gcttcaatca caaagtatca
121 aaaagttggt gaacaaggat ccattgctgt aaggcgacca gtgcatacct tttgggctaa
181 tcacagaggg ggcaaccaaa gtgaaggtgt tgatcctggt gctttgtggc agggcaattc
241 gagctgcact gtccgagaac gttttaaggc tgcagaacct ttctatggtg gcagtatgcc
301 ctatgctcaa cgaccatcaa gttctggcaa ccaacagtca gtatttgaat tgaggatgct
361 ggaggaaagc tggtacagaa gtccagaaga gatcagtcag ttgaaaggca tacttccatc
421 aaacatctac agccttgggg ttcttttgtt tgagctcttt tgctgctgtg aaacatggga
481 ggtacattgt gctgcaatgt cagatctccg tcatcgcatt ttgcccccaa attttctttc
541 agaaagtcct aaagaagctg gtttctgtct ttggttactc catccagatc cctgttctcg
601 gcctaaggca agagatattc tagggtgtga cttgataaat gagggtcgag atttgtcctt
661 gttagataat aaaacaccag ttgctgtcaa tgaagaagac accgaatctg gtttgctact
721 gggcttcctt tctcaactca aggaagaaaa ggagatgcac gctgccaaat tgtcagctga
781 tcttgcgagc ttggaaacag atatcgcaga ggttgagaaa agacactcaa tgaggatggg
841 atttagttta gaggacatgg atgtactggc aggttctaat gatctctcag gagcttctgc
901 atgtgccctg ggaggtgcat cactctcagg tttgccacca tctttgtgca gatcgagcat
961 atatgaggag cgggtcatga gaaacttgga gcagcttgaa aatgcatatt actccatgag
1021 gtccaccatt gacacatcgg aggccaatat aattaaacga gttgataatg atgctttaag
1081 ggttcgtcaa aattttcacg agctgcatag tgatgctaat gctatcgatg agcaagcaga
1141 cccccttgga tggtttttcg atggcttatg caagtatgcc cggtatagta ggtttgaagt
1201 acggggaatt ctaaagaatg cagatatact taactcacca aatgtgattt gttcgttaag
1261 ttttgatcgg gatgaagaat attttgctgc tgctggtgtt tcaaagaaaa ttaaaatatt
1321 tgaatttgat gcccttttaa atgatcgtgt tgatattcat tacccattga tagagatgcc
1381 tagcaaatcc aagcttagct gtgtctgttg gaacagctac ataaaaaatt acttggcatc
1441 aacagactac gatggcactg ttcagttgtg ggatgcaagc tcgggtcaag gattcacgca
1501 gtttacggag caccgaaaaa gagcttggtc tgtaagtttc tcagaggtgg atccaactaa
1561 attggcaagt ggaagtgatg attgctgcgt gaaagtttgg agtattaacc agaaaaattg
1621 cactgatacc atcagaaacg tggccaacgt gtgctgtgta cagttctccc catactcctc
1681 tcgtatgtta gcttttggct cggctgatta taagatatac tgttatgatc tgaggaatac
1741 aagaatccca tggtgtacta tttctgggca tggaaaagct gtcagctatg tacgattctt
1801 ggatccagaa acacttatct ctgcatcaac tgataacacc ttgaaaatat gggatctcaa
1861 ccagactaat tccagtggat tatctactga tgcctgcagt atgacgttga gtggccatac
1921 caatgagaag aattttgtgg ggttatctgt tcacgatgga tacataactt gtggttctga
1981 aaataatgaa gtattttctt attacaaaac ctttcccatg ccaataactt ctcacaagtt
2041 cggttcaatc gacccaataa ctggacaaga gacaaatgat gatagccaac aatttgtgtc
2101 cagtgtttgc tggcgaggga ggtcgaacat ggtagtggct gccaattcta ctggcagcat
2161 taaagtgctt gagcttgtgt gaataagttg atgggaactt tagtgaatgg gaagatctga
2221 atcctaaggt tgccatactg catggttgat gcttagctgc ccttgtatat ttccgtgaac
2281 gtctgccttc gcagcaggca gctactcaag catcaaccat ccttcggttc tgggcttcat
2341 tccatcagag catttgcaac actcagttta ccccattcaa gcaacctaca gcgccaaact
2401 attggtggtg aagagatcgg cgaacaaaga gaacaaagag atcttcgaag gtatgaaagg
2461 tactggcaat tcttgaagat gattgccacc accaaaatat tttgtttgta tggcgttttg
2521 acatagtaca agtcagcatt ttaaggaggg ccttaggggt ctgtacagat tagggtcaca
2581 aagggtcgat gtaatataat atatcatgaa attggatatg cttttgggct aaaaagcctt
2641 acatgataca tctactcgag aaatatcact gggaattaac cc
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