LOCUS AK112101 1727 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-110-B02, full insert sequence. ACCESSION AK112101 VERSION AK112101.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1727) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1727 /clone="002-110-B02" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1727 /db_xref="Osa1:LOC_Os09g38440" /db_xref="RAP-DB:Os09g0556700" /note="(RAP Annotation release2) Nuclear protein SET domain containing protein" /note="(Rice Genome Annotation Project) SET domain containing protein, expressed" /note="mapping to R09-TIGRv4S1-000757F (Chr.9: short arm=22131104, long arm=22134244, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 522 a 301 c 435 g 469 t ORIGIN 1 agaggtgtga agaatttaca aatgaatcag catgcagtcc ttgtggcgat aaacacgctg 61 cggttcaagc ctgtgtaaca aaatttgaaa gatatataca aaggcctagt ttagatgctt 121 catgttgtgt ttgtggtatc tcaaacctgg agccttccaa tcagttgata gagtgcagca 181 agtgctttat caaggtgcac caagcttgct atggtgttct aaaagttcca agaggacaat 241 ggttctgtaa gccctgcaag atcaataccc aggacacagt ctgtgttctg tgtggttatg 301 gaggtggagc tatgacaagg gcattgaaag cccagaatat tctcaaaagc ttgctgaggg 361 gtattgcaac tgcaaaaaga tcagataaat atgtttattc atcaggaaat gtgaacagtg 421 agtgtacaag caagttacat ggggaatatg tcaggcatga ttcatttaat ggacacagat 481 caagaagctt caatgctata tcttcttttg gtataaaaga agcttcaata ggtagtgcac 541 gtggggacat tatcagcaag tcgtggacct ctaatcgcaa ttccagtcta cttggtccac 601 gaacaaggca gtgggttcat gtggtctgtg ggttgtggac acctggtaca aaatgcccaa 661 atacaatcac aatgagtgct tttgatatat caggggcttc acctgccaaa agaaataccg 721 aatgctcaat gtgtaacaga actgggggct catttatggg gtgtcgtgat gttaattgct 781 cagttctctt tcatccttgg tgtgctcatc agaggggttt gttgcaaagt gagccagaag 841 gcgagcataa tgaaaatgtt ggtttttatg ggagatgcct ggatcatgct atgcttgatc 901 ctaatcatgt taatcctaag aaggaatgct tgaggagcaa tgactggaca tgtgcacgta 961 ctgaggtttt tagaggccga aagggagact catttggtgc taatcgtagc aggaaaccag 1021 aagagaagtt tggtgagtgc agtgtttccc aagaacagat caatgcttgg atacgcataa 1081 atggatcgaa atcttgcatg agaggacaga aggaatatgt ccactacaag cagttaaagg 1141 gatggaagca tttggtagtg tacaaatcta gcattcatgg gcttggtctc tacacatcgg 1201 agtttattcc acgtggctct atggttgtac agtatgttgg tgaaattgtt gggcaatgcg 1261 ttgctgacaa aagagagatt gaataccagt ccgggaaacg gcagcaatat aagagtgctt 1321 gttacttctt caagattgga aaggaacata tcatcgatgc cacccgcaag ggtgggatcg 1381 caagattcat caaccactct tgccaaccaa actgtgtcgc aaaaataatc tcagtaagga 1441 acgagaagaa ggtagtgttc ttcgcggaac gccacataaa tccgggggag gaaattacct 1501 acgattatca cttcaaccga gaagatgaag ggcaaagaat cccctgcttc tgtagatcga 1561 gaggctgcag gagatatctg aactaagata gtgtacttcg gtcgtatgtt tgtagtgctg 1621 tttaaacatt gtaatgtgcg cactgtatat atgaataaac tgtagggact taatctggca 1681 ctgataattt agacatccaa acttaaattt agaatggatt tagaatt //