LOCUS AK112101 1727 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-110-B02, full insert
sequence.
ACCESSION AK112101
VERSION AK112101.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1727)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1727
/clone="002-110-B02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1727
/db_xref="Osa1:LOC_Os09g38440"
/db_xref="RAP-DB:Os09g0556700"
/note="(RAP Annotation release2) Nuclear protein SET
domain containing protein"
/note="(Rice Genome Annotation Project) SET domain
containing protein, expressed"
/note="mapping to R09-TIGRv4S1-000757F (Chr.9: short
arm=22131104, long arm=22134244, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 522 a 301 c 435 g 469 t
ORIGIN
1 agaggtgtga agaatttaca aatgaatcag catgcagtcc ttgtggcgat aaacacgctg
61 cggttcaagc ctgtgtaaca aaatttgaaa gatatataca aaggcctagt ttagatgctt
121 catgttgtgt ttgtggtatc tcaaacctgg agccttccaa tcagttgata gagtgcagca
181 agtgctttat caaggtgcac caagcttgct atggtgttct aaaagttcca agaggacaat
241 ggttctgtaa gccctgcaag atcaataccc aggacacagt ctgtgttctg tgtggttatg
301 gaggtggagc tatgacaagg gcattgaaag cccagaatat tctcaaaagc ttgctgaggg
361 gtattgcaac tgcaaaaaga tcagataaat atgtttattc atcaggaaat gtgaacagtg
421 agtgtacaag caagttacat ggggaatatg tcaggcatga ttcatttaat ggacacagat
481 caagaagctt caatgctata tcttcttttg gtataaaaga agcttcaata ggtagtgcac
541 gtggggacat tatcagcaag tcgtggacct ctaatcgcaa ttccagtcta cttggtccac
601 gaacaaggca gtgggttcat gtggtctgtg ggttgtggac acctggtaca aaatgcccaa
661 atacaatcac aatgagtgct tttgatatat caggggcttc acctgccaaa agaaataccg
721 aatgctcaat gtgtaacaga actgggggct catttatggg gtgtcgtgat gttaattgct
781 cagttctctt tcatccttgg tgtgctcatc agaggggttt gttgcaaagt gagccagaag
841 gcgagcataa tgaaaatgtt ggtttttatg ggagatgcct ggatcatgct atgcttgatc
901 ctaatcatgt taatcctaag aaggaatgct tgaggagcaa tgactggaca tgtgcacgta
961 ctgaggtttt tagaggccga aagggagact catttggtgc taatcgtagc aggaaaccag
1021 aagagaagtt tggtgagtgc agtgtttccc aagaacagat caatgcttgg atacgcataa
1081 atggatcgaa atcttgcatg agaggacaga aggaatatgt ccactacaag cagttaaagg
1141 gatggaagca tttggtagtg tacaaatcta gcattcatgg gcttggtctc tacacatcgg
1201 agtttattcc acgtggctct atggttgtac agtatgttgg tgaaattgtt gggcaatgcg
1261 ttgctgacaa aagagagatt gaataccagt ccgggaaacg gcagcaatat aagagtgctt
1321 gttacttctt caagattgga aaggaacata tcatcgatgc cacccgcaag ggtgggatcg
1381 caagattcat caaccactct tgccaaccaa actgtgtcgc aaaaataatc tcagtaagga
1441 acgagaagaa ggtagtgttc ttcgcggaac gccacataaa tccgggggag gaaattacct
1501 acgattatca cttcaaccga gaagatgaag ggcaaagaat cccctgcttc tgtagatcga
1561 gaggctgcag gagatatctg aactaagata gtgtacttcg gtcgtatgtt tgtagtgctg
1621 tttaaacatt gtaatgtgcg cactgtatat atgaataaac tgtagggact taatctggca
1681 ctgataattt agacatccaa acttaaattt agaatggatt tagaatt
//