LOCUS AK111898 2366 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013064P06, full insert
sequence.
ACCESSION AK111898
VERSION AK111898.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2366)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2366
/clone="J013064P06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2366
/db_xref="Osa1:LOC_Os05g30870"
/note="(Rice Genome Annotation Project)
serine/threonine-protein kinase NAK, putative, expressed"
/note="mapping to R05-TIGRv4S1-000563F (Chr.5: short
arm=17841696, long arm=17849088, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 550 a 571 c 609 g 636 t
ORIGIN
1 gatctcactc ttgcccctgg gctgactttt gccctccctt gggcatccat ctcctctccc
61 tccctcccct cccctcccat ccctaccccc aaaatcgccg accgaccgcc cccaaatccc
121 atccaagagc cgtcgcctcc tccaaagatc ggatttcgag accccccaga tcggggggag
181 agatccccgt gtcgtctggt gtggtgggtc ggcctccgcc ccccggccgc cgcgcttctc
241 ttgatctttc tttctttttt ttgatttttt tgcgtttccc ctccgggaga ggggagggga
301 ggagggttct tggatgggct gctttccgtg cttcgggtcg ggcggcaagg gggaggcgaa
361 gaagggcggc ggcgggcgca aggacggcgg ctcggcggat cgccgcgtcg cccgggtcgg
421 atcagataaa tcaaaatcac agggtggatt ggactctagg aaggatgcat tcatcccaag
481 ggatgcgaat ggtcaaccta ttgctgcaca cactttcact tttcgtgaac ttgctgctgc
541 cactaagaac ttcagacaag attgtctatt gggggaggga ggttttggcc gcgtatataa
601 aggacacttg gagaatgggc aggctgttgc agtgaagcaa cttgatcgca atggacttca
661 aggaaataga gagtttctgg ttgaagtcct tatgctcagt ctattgcacc atgataacct
721 ggttaaccta attggatact gtgctgatgg ggatcaacgt ctccttgtat atgagtttat
781 gccattggga tcacttgagg atcatttgca tgatattcca cctgacaagg aacctctcga
841 ctggaataca cggatgaaga ttgctgctgg tgcagccaag ggcttggaat tcttgcatga
901 caaggcaaat cctcctgtta tttacaggga tttcaagtca tcgaacattc ttcttggtga
961 gggataccat ccaaaactat cagactttgg cctggcaaaa cttggccctg ttggtgacaa
1021 aactcatgtt tcgacacgtg ttatgggaac ttatggctac tgtgccccag aatacgcgat
1081 gactgggcag cttactgtta aatctgatgt gtatagtttt ggtgttgtgt tccttgaact
1141 gattactggc cgcaaagcaa tcgacaacac caaaccactt ggagagcaga acctagtggc
1201 atgggcccgt cccctgttta aagaccgcag gaaatttcct aaaatggctg atccattact
1261 tgcgggccga tttcctatgc ggggcctgta tcaggcttta gcagttgctg caatgtgctt
1321 gcaggagcaa gctgccacta ggccttttat aggagatgtg gtcactgctc tttcatatct
1381 tgcttcccag acatatgatc caaatacacc tgttcagcac agtcggagca atgcatctac
1441 ccctagggcc agaaaccgtg ttggtgcgaa ttttgaccag cgtcgtcttc actcaccaaa
1501 tcaccaacaa tctccagatt taaggaaaga aggcaccaca acatcaaaat atgaagctga
1561 ggttagcagg actaattctg gcagtggctc tggtcgacga gctggcttgg acagcatgga
1621 tgtgacaggt tcacagatgg gtagtcctgc tcacgcagga aggaagaggg aatcatcgcg
1681 gagtactgat aggcagcgtg cagtcgcaga ggccaaaaca tggggggaga attcaagaga
1741 aagaaagtgg ccaaatgctc gtggcagctt tgatagtaca aatgagtaaa cctctgaagc
1801 agaaggttca gttaagtcgt cattctaggg gaaaaaaaaa gatgaatcac ttgcagaacc
1861 caactgggtc gaattaggta catggggcat tttcgctcca tctcggctct gcggtctatg
1921 tgaatagagc ttctcttttt cttttttctg tcctggagac accaccgctg cttcagagct
1981 ctcctctcgt ccatacgaat agcatcaccg cgatctcatc gtcgacgcgc ctattcctgg
2041 cgtccattcc tcgtgattga tcatgcaaat gtgcctttta ttcatcatga agacagaaac
2101 accgtttggc tggaaatgta ggtagaaagc aaaagagaaa atttgctctg gagctatcca
2161 ttgggtatct catgtcgatg ttgttgcatg atgagtgtca gcggctgcac cattgttcct
2221 gagtgttcta gctctatgtg aagtgaagtc tgcgtaccga gggatgtgat gttctttttt
2281 cttttctttt cttttctttt tgtctcaatg gtttgtacct agggggtacg gcattttacc
2341 tgtgtttcat acacctgtca tttggc
//