LOCUS AK111809 4750 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116E20, full insert
sequence.
ACCESSION AK111809
VERSION AK111809.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4750)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4750
/clone="J013116E20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4750
/db_xref="Osa1:LOC_Os10g10130"
/note="(Rice Genome Annotation Project) OsWAK112d - OsWAK
receptor-like protein kinase, expressed"
/note="mapping to R10-TIGRv4S1-000145R (Chr.10: short
arm=5305815, long arm=5310645, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1476 a 932 c 897 g 1445 t
ORIGIN
1 gacgcttagc tagacatgct tatgttgtta ctaaacatac gtagacaagt ccaaacttta
61 tacttgagag aatcgagtaa ctctgtagca agagttcaga tgggccacct caatatcatg
121 ttagctttcc tttcatttgt gttattaggg ttagctgaag tcgagggaac tgtagcactg
181 agtcaaatcc tctcaaatag ccatctgatc accccgtacc gagaggttac ggcaagaaag
241 tttgagagaa ggtccttact gcaggatcat agtagtgatg ataggagatc atctaatgca
301 agccttccct ctgctgccac acttgctaac tgtccaaagc gatgcggcaa cttgagcttc
361 gactatccct tcggcatagg agatggttgt ttccgccatc ccgatttcag tctcacatgc
421 aacgccacta ctcagcctcc caaactcctc ttgcatatta acgaaagcgt ggaggttata
481 gataatattg aggtcgtcgg taaggatata gctgagtttt tctacttcaa cttctttatg
541 gtcgcattta accatctcat ccccataaaa gctggtgtcg atgtctataa ccttacatgg
601 aaagccccag ggatttcttt tactatttca gagatgatga taattactgt cgtcagctgc
661 gacttggatg tattcttgat aggccaagac aacactccta aactgctttg catggttgct
721 tgtcccaaca aagagattgc agacatggtg tacatgcaag actgtgaagg ccctggctgt
781 tgtactgtat tatctgaaac accagttcag gctgtacaat tgcagtttgt tcgccatgag
841 acaagtaatg ctggaaaaat ctccaatctc agcatgctat gggatagaat caacataact
901 attggggcgc cacttgtttg gagtattgtt gaccaaacaa gatgctcaag aaacatggaa
961 gataacttcg cttgtgtcag caaccacagt gggtgcataa cttctgtgtt tagagatatt
1021 ggctatgcct gccaatgcaa ttctggctac aagggaaatc cttttatcct tgatggttgc
1081 aagcatgaca gcggtaactt tctccaccat accttaatta tcgtattaat ttaaaagata
1141 aggatagcaa tccggcctct atatctacag tagtcagtag atataccttg tcgtcgtatt
1201 acatttaaaa aaacaaaagt cactgtttta gtactttaaa tatccaagca tttgatttta
1261 gtactgaaag tctgaaatca acatgcacaa tcatctgatt ttgacctgac atttgggagt
1321 tgggaccgat tgtaatttgt aaccctttct cttgtcttca ccatgctatt tgacgcaatg
1381 aacaggatga ggtaagtaat atgctgacgg agcaattgaa tgtcatattc aggatcaagt
1441 atattcctct ttaattccag ggaactgaca aaaaaacgaa ttattcagca accacacgag
1501 taagttcttg tcagtttcca ccctaggaag atcagctcgg aatattttta gccacttgac
1561 atttttgtca aaaaatttgg gaacttctgg gataattggg tttgcagata gaattttctc
1621 ccataattag tgaatatata cttctggggc aaacatattt tccacttttt tttccttcta
1681 ctaggataaa cagtatatac tggattttat tatttccatt tattcatttt ggaaatgaaa
1741 acattatctc tcttttaccg ataccatatt ttgtggtcaa caatagatga ctatacagta
1801 ctttgatgtt ctcgtacaaa atgaaaatgc actattaatc cactttatct atgcgtaaat
1861 acatgcatca ctcattttta caaatacaac taggacatgt atgcgatcac atcctatgta
1921 cacaagcttt gcatgtaaac atcgtgcaca ccaactaaca aatatcacag aaaaatctaa
1981 agtattatat cccaatataa aatcttaacc tcaaatttat tatattttta cctaaaaata
2041 aaaatttgat aattttaaac tcaaatttat tatatctttt tagatctaat ttgaagataa
2101 aatgtatccg tgcaatttta tctataattt tcggtgatat ttgttgttag tgtgcacggt
2161 atgtacacag gaaggcttat gtgtatacga ttatgtttcc aacatgtata cccttttacc
2221 agaaacaacg agaacacttg gagatggggc ataacatgga gtttttactg atgccaggtt
2281 acaaccctag accagaaaag cataattgcg ctcgacaatg tgggacaatc acagtcccgt
2341 ttccgtttgg ccttgaagag ggttgctccg caaggaaacg ttttcagctc aactgctccg
2401 acaagacaaa ttcggtcctc aagttcaatg actattttca ggtgacgtat ataaatgtca
2461 gtgaaggact tctgggcatc aaacacaact catcgctgga ggagcaacta ttcaatataa
2521 tgatggaaat gatgacttct gataatgagc cagacctatt tgttgaccct cttgaatcag
2581 tctctgtgca atgggccgtt gccaacctga catgccaaga ggcgcaacac aacacttctg
2641 gatatgcatg tgtaagtacc agcagctcct gcttgaatgt ccttagctcc atggatggtt
2701 atgttggcta cagatgcagt tgcttgcctg gttatcgtgg aaatccatac atcctagatg
2761 gctgcgaagg taattcacca acttcatccc ccaaattaaa catgattgct gcaaaggtca
2821 cattgaattc aaatctttga tatttaaaca acgaaaaaca tcgaccatta tggcctaaca
2881 gagtcaacga taccaatcac caatgctgaa acatcaaatt tcaaatgatg ttcgagtggc
2941 tgctcttccc tactgtcata tttttatcct gatcagtaaa ttttattaaa ttaactatta
3001 aataatcaca atttctctta ttttctacaa attgaacgat gttcttgcat acaaagcaaa
3061 gagttcctca tggaaattat ctgactatca aacatacata agtccccaat gttttcttaa
3121 tatttatcat tctagtgtga taaaaagaat catgtggcca atattttatt tggtacataa
3181 atacagtttt ttgttcaaaa ttatatattg ccttactgag atgtgtttac cggttacaga
3241 tatcgacgag tgccgagaga caccaggaat ttgtaaagga gtttgcaaga ataccgttgg
3301 aaactacagc tgcaccaagt gccctgatca taccgagtac gatattttaa gaatgcagtg
3361 tactccaata agaaagaaaa gcttctactt aggtattata atcggcctta gcagtggctt
3421 tggaatgcta cttcttggat taagtggaat agttctcatt cgaagatgga aaagacatgc
3481 acagaaaaga ctgcagacga agtatttccg aaagaaccag ggccttctat tggaacaatt
3541 gatatcatcg gatgaaaatg ctagtgagaa gacaaaaatt ttctccttag aagagcttaa
3601 aaaggcgaca aataactttg ataccacacg tatccttggc cgtggagggc atggaacagt
3661 atacaaaggt atcttatcta accaacatgt ggtggctatt aaaaaggcca aagttataag
3721 ggaatgcgag attaatgatt tcatcaacga ggtttcgatt ctttctcaga taaatcaccg
3781 aaatattgtt aaactctttg gatgctgtct tgaaactgag gtccccttat tagtctatga
3841 ttttattccc aatggttcat tgttcggact acttcatcca gattccagta gcacaatcta
3901 tttatcatgg ggtgactgcc taaggattgc agcagaagca gctggagctc tatattatct
3961 ccactctgca gcatcaattt ccatcttcca ccgtgatgtg aagtcatcta atatactctt
4021 ggatgcaaac tatactgcta aagtttcaga ttttggtgct tcaggatcag ttcccatcga
4081 tcaaacccat atcatcacaa atgtacaggg tacatttggt tacttggatc cagaatatta
4141 ccaaactagg cagctaaatg agaagagtga tgtctatagt tttggtgtgg tactcctaga
4201 acttcttctg agaaagcaac ccatttttac aataaactct gggatgaaac aaaatttgtg
4261 tagttacttc ctttcagaga ttaaaaccag gccaattaca gatatggtcg atgctcaagt
4321 tctcgaagaa gcaaatgagg aagatatcaa agaagttgca tcccttgctg agatgtgctt
4381 gaagctaaaa ggtgaagaaa ggcccacgat gaagaaagta gagatgacgt tacagcttct
4441 gcgaacaaaa acgatgaact catctcaagt agatccaacc attgaccaag agattcaaac
4501 tgttctgact gaaggagcca gtgacccaga gatacaacca ttagtaacaa atttggatgt
4561 tgatagagct aatgcagcat ctcaacgctt ccaaatatca tgctatagct tggagcaaga
4621 attcttgtca tctgctagct taccacggta gatgtgttta tcctatttct gatgtgttta
4681 gttaacttgc atatgtattg tgtacttgca gtcatgtatg ttgaaatgag aaattatact
4741 atatgccatc
//