LOCUS AK111613 3065 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013099I11, full insert
sequence.
ACCESSION AK111613
VERSION AK111613.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3065)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3065
/clone="J013099I11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3065
/db_xref="Osa1:LOC_Os05g08810"
/db_xref="RAP-DB:Os05g0180600"
/note="(RAP Annotation release2) Similar to
Phosphatidylinositol 3-kinase, root isoform (EC
2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K)
(SPI3K-5)"
/note="(Rice Genome Annotation Project)
phosphatidylinositol 3-kinase, root isoform, putative,
expressed"
/note="mapping to R05-TIGRv4S1-000234R (Chr.5: short
arm=4832235, long arm=4843618, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 855 a 692 c 717 g 801 t
ORIGIN
1 gtcgatcccc aacctcctcc tcctcctcgc cgccgactcg ccggcgacgc cacctccctc
61 ccagcgccgc cgcaacgcaa accgtcttgg ttggcctcgc gcacgtctct agcgacgcca
121 gctcggctcc tgcctccagg aaatcgcgga cgtcggcgtc gcccaagcag ggcccagggc
181 gcggctggtg ctggacgccg ccgccgcccc acgctgaagc aggcgaaggg agcgtccggc
241 gcaggtctgg actgggcccg tggtggcgtc gccacgcggc ggcaatccgc cagcagcgcc
301 atggcgaacg gcggcgagtt ccgcttcttc ctctcatgcg acatcagcct cccgctcgcc
361 ttccgcgtcg accgcctcct ccactacccc acgcccaccc agccttctcc tcctcaagat
421 tgtacaacct tggcgaccaa caagaaggtt ccggagcttg ttgttgagtg caaactctac
481 atcgatggga tacaattcgg cttgcccgtg agcacgaggc tcgaatcgtc agggccacca
541 tacttctgga acgaggttat gacgctcacc gcgaaataca gggatctcac ctccctttcg
601 cagcttgcgt tcacggtttg ggatatgtca tctggtgagg acggaaatat tgttggtgga
661 gccaccatat ttcttttcaa caacaaaaag caacttaaaa caggaaggca gaagctgcga
721 ctatggcccc aaaaggaggc agatggaaga gtccccacca cgactcctgg caaggtacct
781 aagaatgaga ggggtgagat agagcgtttg gagaggcttg ttaataagca tgaaagagga
841 cagatacaac atgtagaatg gttggatcgt cttttcttca gagccatgga caaagctaag
901 gagaagtgtg aaagaactga aaatttgtac cctagccttg ttgttgaatt ttgcagtttt
961 gaacacagag ttgtcttcca ggaatctgga gcaaatttct atgcaccagc ccctgtgttg
1021 ttatcaaatc aacttgttac tgtatgggac cctgaactag gaagaaccaa tccatctgag
1081 cacaaacagt taaagcttgc aaggagccta actcgtggaa taattgataa agatctgaaa
1141 ccaagctcaa atgagcgaaa gtgtctgcaa agaattatca agtttcctcc tacacgctct
1201 ttacaagtgg atgagaagca gctggtctgg aaatttcggt tctctttgat gtctgagaag
1261 aaagctctta caaagtttgt tcgtgcagtg gactggagcg atatccaaga agctaaacaa
1321 gctgttgaat tgattagaaa gtgggaaaca attgatgtgg ctgatgcatt agagcttctc
1381 tcaccagact ttgaaagtga ggaggttcga gcttatgccg tcaacatact tgaaagggca
1441 gatgatgaag aattacaatg ctatttactc cagctagtgc aagctcttcg gtttgaaaga
1501 tcggatgagt cttgtctggc acactttctt gtaaaacgtg ctgtatcaaa cattgaaatt
1561 gctagcttcc ttcgctggta tgtggtcgtt gagctgcgtg acactgcata tgcaagacgg
1621 tattacagta catatgactt gcttgaaaat ggcatgatga aatttgctag ggatgatggt
1681 gatgaagacg gatttcgact ttggcagagt ttaacacggc agactgaact tatggctcag
1741 ttaggttcta ttatgaagga tgtaaaacaa gttcgtggta gtgcacaaaa ggaaatcgat
1801 ggattaagac aattattatc aggagttttc agtgagctta ccaactttga tgagccaatt
1861 cgttcaccat tagcaccaac tgttctcctt actggggtta tacctcaaga atcatctata
1921 tttaaaagtg ccttgcatcc tttgcgcctt gcctttaaga ccgcaaatgg gggaatatcg
1981 aagataattt ataaaaaggg agatgatctc cgccaagatc agctggttat tcaaatggtc
2041 tccttgatgg accggctgct caaattagaa aatatggatt tacaccttac tccatatcga
2101 gttcttgcaa ctcaaccaga tgaaggaatg cttgaattta ttccttccag ttcacttgca
2161 cagattctat cagaacatcg cactattaca agttacctac aaaaatttca tcctgatgaa
2221 gatggtcctt ttggtataac tgctcagtgc ttggaaactt tcataaaaag ctgtgctggt
2281 tactctgtca ttacatatat aatgggggtt ggagacaggc atctggataa tcttcttcta
2341 acagatgatg gacgcctctt ccacgttgat ttcgctttca ttctgggtaa agatccaaag
2401 ccatttccac caccaatgaa actatgcaaa gaaatggttg aggccatggg tggtgcagaa
2461 agccaatact acacgagatt caagtcatac tgttgcgaag catacaacat tttaaggaag
2521 tccagtagcc tcgtattgaa tctgttcaac ttgatgagaa gatcaaatat tccagacatc
2581 actaacgagg aaaatgcagg ccttaagctt caagagaaat ttcggcttga tctggaagat
2641 gaggaagcca tacatttctt ccaagatctt atcaacgaaa gcgtcagcgc tttgttccct
2701 cagatggttg agacaatcca tagatgggct caatactggc gctaagcaaa gtcggtaaca
2761 ggcatgattg atgtatatac gtactaacat gctcgcctgc gaccgattta tttgcagcag
2821 gttgcaggtc tgaactctga atccatttac atttgtcgat agcttagttt gtgaatatac
2881 cacgcatgcg cctggttaga aagctattga atgtagacag aagtgtaata aggctagcag
2941 tattaaaaaa agaatcttta gcggcaaata taataatgtt ttatgtgcct caaccctgac
3001 aattttatgc ttctttttgt aagtttggag aattcgaacg tagaaaataa aataaactat
3061 ttatt
//