LOCUS AK111532 1459 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013031M08, full insert
sequence.
ACCESSION AK111532
VERSION AK111532.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1459)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1459
/clone="J013031M08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1459
/db_xref="Osa1:LOC_Os05g08810"
/note="(Rice Genome Annotation Project)
phosphatidylinositol 3-kinase, root isoform, putative,
expressed"
/note="mapping to R05-TIGRv4S1-000234R (Chr.5: short
arm=4837069, long arm=4843629, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 367 a 391 c 378 g 323 t
ORIGIN
1 gcttctccaa ctcgcgatcc ccaacctcct cctcctcctc gccgccgact cgccggcgac
61 gccacctccc tcccagcgcc gccgcaacgc aaaccgtctt ggttggcctc gcgcacgtct
121 ctagcgacgc cagctcggct cctgcctcca ggaaatcgcg gacgtcggcg tcgcccaagc
181 agggcccagg gcgcggctgg tgctggacgc cgccgccgcc ccacgctgaa gcaggcgaag
241 ggagcgtccg gcgcaggtct ggactgggcc cgtggtggcg tcgccacgcg gcggcaatcc
301 gccagcagcg ccatggcgaa cggcggcgag ttccgcttct tcctctcatg cgacatcagc
361 ctcccgctcg ccttccgcgt cgaccgcctc ctccactacc ccacgcccac ccagccttct
421 cctcctcaag attgtacaac cttggcgacc aacaagaagg ttccggagct tgttgttgag
481 tgcaaactct acatcgatgg gatacaattc ggcttgcccg tgagcacgag gctcgaatcg
541 tcagggccac catacttctg gaacgaggtt atgacgctca ccgcgaaata cagggatctc
601 acctcccttt cgcagcttgc gttcacggtt tgggatatgt catctggtga ggacggaaat
661 attgttggtg gagccaccat atttcttttc aacaacaaaa agcaacttaa aacaggaagg
721 cagaagctgc gactatggcc ccaaaaggag gcagatggaa gagtccccac cacgactcct
781 ggcaaggtac ctaagaatga gaggggtgag atagagcgtt tggagaggct tgttaataag
841 catgaaagag gacagataca acatgtagaa tggttggatc gtcttttctt cagagccatg
901 gacaaagcta aggagaagtg tgaaagaact gaaaatttgt accctagcct tgttgttgaa
961 ttttgcagtt ttgaacacag agttgtcttc caggaatctg gagcaaattt ctatgcacca
1021 gcccctgtgt tgttatcaaa tcaacttgtt actgtatggg accctgaact aggaagaacc
1081 aatccatctg agcacaaaca gttaaagctt gcaaggagcc taactcgtgg aataattgat
1141 aaagatctga aaccaagctc aaatgagcga aagtgtctgc aaagaattat caagtttcct
1201 cctacacgct ctttacaagt ggatgagaag cagctggtct ggaaatttcg gttctctttg
1261 atgtctgaga agaaagctct tacaaagttt gttcgtgcag tggactggag cgatatccaa
1321 gaagctaaac aagctgttga attgattaga aagtgggaaa caattgatgt ggctgatgca
1381 ttagagcttc tctcaccaga ctttgaaagt gaggaggttc gagcttatgc cgtcaacata
1441 cttgaaaggg cagatgatg
//