LOCUS AK109923 1312 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-151-C02, full insert
sequence.
ACCESSION AK109923
VERSION AK109923.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1312)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1312
/clone="002-151-C02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 189..797
/db_xref="Osa1:LOC_Os04g56500"
/db_xref="RAP-DB:Os04g0660100"
/note="(RAP Annotation release2) Helix-loop-helix
DNA-binding domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R04-TIGRv4S1-001208R (Chr.4: short
arm=33463156, long arm=33464468, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG98961.1"
/translation="MDAKRTPPPPTPPNPNPSVIGSGAAADGGGFGRGEAAAATKHML
AFHFLRALSRIHRATPVTRRTRTIRRAAYSSMARAASPRRAWSRALLGQVRARRSRTL
MRRAAVLVRRRVVAAPAPSPASARGVRIIAAGETSAAARAVPPPPRQQGEPPRAEALR
RLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGLVDLFSYQ"
BASE COUNT 256 a 347 c 385 g 324 t
ORIGIN
1 gtgtcagagc cgtgttcctc gctctcttcc ctttcctttt tttctctctc taaaatcgca
61 acccacaaat ccttctgatc cgtttgtgtc agagccaaat cttcttcttc ttctccatct
121 ctctcctctc ctcttctctt ctctcgttgg aaggtgagga ggtgaggtga ggttgggggc
181 gccgtttgat ggacgcgaag aggacgccgc cgccgccgac gccgccgaac cctaacccta
241 gcgtaattgg cagcggcgcc gccgcggacg gcggcggatt tgggaggggg gaagcggcgg
301 cggcgacgaa gcacatgctg gccttccact tcctgcgcgc gctgtcgcgg atccaccggg
361 cgacacccgt gacgcggcgc acgcggacca tccgccgggc ggcctactcc tccatggcgc
421 gggcggcgag cccgcgccgc gcgtggagcc gggcgctgct cggccaggtc cgcgcgcgga
481 ggtccaggac gctgatgagg cgcgccgccg tgctggtgcg gaggcgcgtc gtagccgctc
541 ctgcgccttc tcccgcctcc gccagaggcg tcaggattat tgctgccgga gagacgtcgg
601 cggcggctcg ggctgttccg ccgcctccgc ggcagcaggg cgagccgccg agggccgaag
661 cgctccggcg cctggtcccc ggcggcgccg gcatggagta ctccagcctc ctggaggaga
721 ccgccgacta cctccgctcg cttcgcgcgc aggtgcagct gatgcaaggc ctcgtcgacc
781 tcttctccta ccaatgatcc atccatcgag taattaacat atgcatcata tggttaatta
841 tttattcgtt cgtcttgcac gcatcacatg ctgctgttgc tgcttctgtt ctacttctct
901 acctacatca tatcgatcta tctcttgttc atgtggatcg atcgatcgat gcatatgatg
961 gttggttaag ataggggatt attattgggg taattaaggg gaggatctag gagattgggt
1021 ggagtgttag tatacatgtt ttttgttttt gttggtaatt aagattattg gtaggtgatg
1081 aaaagattgt tggatacata catccatgta tagaagtata ggccgaccgg ctgggagcac
1141 aatgaattga atcatatata ccaagaagaa ggctttatag agagagagag agagaggggt
1201 aattaattgt aacatataaa gagaaggatg aagttacata tactatatga tagtgaatta
1261 gtgcagtgtt aattgttgtc aattgtcagt aaatcgatct atatatctgc gt
//