LOCUS AK108057 1722 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-138-A01, full insert
sequence.
ACCESSION AK108057
VERSION AK108057.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1722)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1722
/clone="002-138-A01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1722
/db_xref="Osa1:LOC_Os02g35000"
/db_xref="RAP-DB:Os02g0555700"
/note="(RAP Annotation release2) Similar to Chaperone
protein dnaJ 10 (AtJ10) (AtDjC10)"
/note="(Rice Genome Annotation Project) chaperone protein
dnaJ 10, putative, expressed"
/note="mapping to R02-TIGRv4S1-000822R (Chr.2: short
arm=20988536, long arm=20991248, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 416 a 417 c 471 g 418 t
ORIGIN
1 caccagcatc gcctcgccgc ccagctgctg ccgctgcgct tgcgcgtcct cactggaaag
61 atggcccccc tctgctctgg cccctctcca ctgcggtatg aatgaatgat gcgccttttc
121 tccctccccc cgcccagatc gatcgccaga cctgcacttt ccagttcccc atccatgctc
181 tgtctgcttc atcctgtccc agcttcttct tcttcttctt cttgttgttg ttgttgttct
241 tggtgcggga gggtgttctt ggggtaggga gcagcatcgg cggcggcggc ggtcatggcg
301 aaggagaccg agttctacga cgtgctcggc gtctgccccg ccgcctccga cgacgagatc
361 cgcaaggcct actacatcaa ggcgaggcag gtgcatcctg acaagaaccc caatgatccg
421 caagccgccg agaaattcca ggctctcgga gaggcctacc aggtgctgag tgatcctctt
481 cagaggaagg cctacgatgg ctatggcaag accagcattt ccaaggagaa catgctggat
541 ggcactgtgg tgttcaccct tcttttcggg agtgagctgt ttgaggacta cattggccac
601 cttgcaatgg caacaatggc ttcctccgag atggccagcg acaatgacaa ccctgaacag
661 cttcaggaca ggctcaaggg tgtgcaaagg gaaagagaag agaagctagc aagattcctc
721 aaggagttcc tcttgcaata cgttcgtggt gaccaggaag gattcgcaag ccgtgccgaa
781 tccgaggcca agaggctgtc cagcacttca tctggactag acattcttcg cacaattgga
841 tatgtgtact cccggcaagc tgcaaaggag cttggcaaga aggccatgta ccttggagtc
901 ccattcctgg cagagtgggt gaggaacaag ggtcacctat ggaggtcaca gatcaccgcg
961 gcgaaaggag ccttgcagtt gctgcagctg caagaggagg cctgccggca gagcggtaag
1021 gacggcttgg ccaccgagag ggatgtcgat ctgcagatga ggatgaacaa agacctgatg
1081 atgagctcac tgtggaagct gaatattgtt gatattgaag tgacccttct acacgtttgt
1141 gaaatggtgt tgcatgaaaa caatgtcaag aaagaggatc tcaaggctcg tgcaatggca
1201 ctgaaaattc ttgggaagat attccagagg gacaaggagg cattgccagg accatcaaaa
1261 ccgaccattc tcgatgatga cagcagctct gatgaaagtt cagatgacga cgtggctcgg
1321 acagtgcctt atcggactcc tgcagttact cagggaattg gcaggttatt cagatgctta
1381 tgcaacccag catatgatgt tgacgatgac tttgaaccac gcaaatgagt ggtaaagtag
1441 cagagaggtt gcaactattt aagagatccc tgaatctttc cagattatgt gcttctgaac
1501 agttggggat catgcatcac cataatttgt ctgggtgtgc attgtagatt ctactgcagc
1561 actggtgatc aggccattag ctcaaaatcg ttctttttct gtccatgaac agtagattct
1621 ttcttagttt ttgatataga ttttatcgaa ttgtgtggtg tttatgtaat tgtttggttt
1681 gggagttgtc aaaagaaaga aagcaagaac aagtgtaact gg
//