LOCUS AK106489 1562 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-105-A03, full insert sequence. ACCESSION AK106489 VERSION AK106489.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1562) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1562 /clone="002-105-A03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1562 /db_xref="Osa1:LOC_Os06g16250" /db_xref="RAP-DB:Os06g0273700" /note="(RAP Annotation release2) Protein of unknown function DUF231, plant domain containing protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R06-TIGRv4S1-000418F (Chr.6: short arm=9252960, long arm=9254522, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 221 a 516 c 565 g 260 t ORIGIN 1 gtgtcagtgg agctcgatcg atcggcgacc tcccactact tacacggcga catggcgacg 61 ccaccggcga ggcctcgtcg gtaaccgtca tgaagcgcct ctccatccgc ggcctcctcg 121 ccggggctcg ccggacccgc cacgccgttg ccgccaaggc caccgcgtcc gtcccggctc 181 tcgtcgcgct cctcttcttc ttcgccgccg ccaccttctc ggtcttctcc ctcggctcct 241 tccgttggcc tggcgccgcc gatgatggcg gtgcggctgc ctgcgacgcc gcgctggcgc 301 gggggcgggg cgagtggatg cgcgacgccg gcgcggcgcc gtactacacc aacgcgacgt 361 gcgggttcat ccagaactac cagaactgca tgaagcacgg gaggcccagc atggagttct 421 tgcggtggcg gtggcgtccc ggtgacggcg gcgaggggtg cgagccgctc gggccgttcg 481 acgcggcgcg gttcttccgg ctcgtgcgcg ggaggtcgat gctgttcgtc ggcgactcgc 541 tggcgagcag ccacgtgacg tccctcgtgt gcgcgctgtc gcaggtggag gcgccggcga 601 ggtcgcgcga cgcggcggcg gggttcgagc actggcgctt cccggcgcac ggcttcgccg 661 tcgcctactt ctggacgccg ttccaggtcc ggtggcgcct gacgcgcggc ccgccggagg 721 cggtcggtcc ggaacggcag ggcgaggtgt tcgccggccc gagcgacctc cacctcgacg 781 agcccgacga gcggtggacg tccgccgcca agagccacga ctacgtcgtc ctctccgcgt 841 cgcactggtt cgcgcgcccc gccgtgtact accagcacgg ccgcgtcgtc ggctgccacg 901 actgcggcga cagcaacgcc accgccacgg ccattgtcaa gcagccagag cacgcgcagc 961 gggcggcgtt ccgcgccgtg ctcggggcgc tggcgcggct ggacgggttc aacggcacgg 1021 cgatcctgcg cacggtggcg ccgacgcact acgagaacgg cgggtggttc gacggcgggg 1081 agtgcaccgc gacgcggccg gccagcgaga gcgaggacgg ggcggcgccg gagatggcgg 1141 cgacggaggc ggagttctac cgggcgcagg tcgaggagtt cgccgcggcg gcggcggcgg 1201 cggcggcgag gaacggcggc aagcgggcgc ggctgaggct gatggacgtg acgcggatga 1261 tgctgctccg gccggacggg cacccggacc ggcacgggca tggcggcggc gagcacgacg 1321 gattcgagat cgactgcctg cactggtgct tgcccggagc gatcgacgtg tggaacgacc 1381 tgctgcttca gataatcgca tcctcatgac aacgctacct gacgtgacac tcagcaaagc 1441 acagacaaat atggagcaat gtagatgaaa atttcccttg gatttgcttt tttttttttt 1501 tttttttttg gctttgcctc gttgagttgc ggaatcagat gcttagatat attgatctga 1561 gt //