LOCUS AK105424 2030 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-C05, full insert sequence. ACCESSION AK105424 VERSION AK105424.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2030) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2030 /clone="001-124-C05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2030 /db_xref="Osa1:LOC_Os01g73040" /db_xref="RAP-DB:Os01g0961200" /note="(RAP Annotation release2) CBS domain containing protein" /note="(Rice Genome Annotation Project) CBS domain containing protein, expressed" /note="mapping to R01-TIGRv4S1-002024F (Chr.1: short arm=42704040, long arm=42708368, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 540 a 490 c 503 g 497 t ORIGIN 1 gcagcttgcc ttggactcca ccatttcaaa tcccctgcct cctccgcctc cgcttccccc 61 ctcaccttct ccggcgatcg ccgccgcgtc cgtacacggc tgaggcctga ggcgatggcc 121 gccgccgccg cctcccagcc tcgcagccac cagcccacct cgctccgccg cgcgccgcca 181 ccttcttcgg ccgcggccaa gccagagccc aatgagaagg cctccaactc caagcccgcc 241 tcgcccgtcc aggcaccgtc gccggagagg acggtgaaga agctgaggtt ggccaaggcg 301 ctcacgcttc cggaggccac ctcggtgtcg gaggcgtgcc ggaggatggc gctcaagcga 361 gtggatgccg cgttgctcac tgattccaac gggatgctct ccggcatact cacagcagag 421 gacatatcag gacgggtgat agcagaggga ctcaggcctg acgaaacaaa tgtggccaaa 481 gcgatgacgc gtaacccagt ttttgttatg tccaactcac cagccattga agcattacaa 541 aagatggtca aaggaaagtt cagacatctt cctgtagtgg aacacggtga ggtaattgcc 601 atgctggaca ttaccaagtt cctttatgat gcaatttcaa gaatggaaaa ggctgcagaa 661 caaggcagtg caatagcagc tgctatggaa ggagttgaac gacagtgggg aaatgacttt 721 ccaggtccac attcatttat cgaaaatctg cgagaccagc tgttcaagcc ttccttatca 781 accatcataa cagaaaataa cagtgttcca gtagtatctc cttcagatcc tgtaatagca 841 gctgccaaaa aaaatgagag aataccgagt caactcagtg gttgtcatga cagggaacat 901 gttgctagga attcttactt ccaaggattt ggtattgcga ttagtggccc aaagtttatc 961 cccagatgtg actcttgtag aaaaggttat gactacaaac cctgattgtg cgacattgga 1021 tacatcgatc cttgaggccc tgcattcaat gcaagacggg aaatatctgc atattcctgt 1081 tgccgacaaa aatggacaga tcatcgcatg tttggatgct ctacaattaa cccatgcagc 1141 tatttcaatg gttgagggag cttctgaagc gaacagtatg gcaaatacta tgatgcagaa 1201 gttctgggat tcagctcttg ccctgcagcc tgcagaggaa tcggatgccc gtagtgaaaa 1261 atctcgaatg gcaacatcag ataatgctga agggaaacat ataccccctc atgttggcaa 1321 ttcattctcc tttaaactac aagatagaaa agggcgtatg cacagattca gttgtgtttc 1381 agaaagctta gatgagcttg tttctgccgt atcgtacaga ctgggaatgg aaaaagagaa 1441 gattaatctt ctgtatgatg acgatgaagg tgacagggtg gttctgacca ccgacggtga 1501 cctcagtgcg gcaattcagc atgcgagatc agctggatgg aaggttctga ggctgcatat 1561 ggatgagccc tggagcaatg gggagcacac cacatcgctt gtaaatactt caccggtgaa 1621 aacagggcgg tcatttctcc ggctaggcat cgcagctggt gcagttgcgg ttgccagcat 1681 gggggtaatc ttctacttga aacgttctga actataatta attcccacac atacatcaac 1741 acatcaacat tgtaaagatt acttcttctc cggaaggtga gatgtgttgt atacgtagga 1801 gacaaacacg tcaaacatca gcaataaggc gtggactatg gttagaaaga atttccacgt 1861 gctaaagctt gtaagattgg atggtgtttc attcaatttt agattggttt attttgagac 1921 agatggagca aagatttttt tgaggttttt tttcttgagt tttcttgttt cagccttcct 1981 accctttttg caaccttgtg tgatataaat aagggattca accagcttgg //