LOCUS AK105079 1418 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-045-H09, full insert sequence. ACCESSION AK105079 VERSION AK105079.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1418) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1418 /clone="001-045-H09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1418 /db_xref="Osa1:LOC_Os06g45640" /db_xref="RAP-DB:Os06g0667100" /note="(RAP Annotation release2) Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC" /note="(Rice Genome Annotation Project) nuclear transcription factor Y subunit C-4, putative, expressed" /note="mapping to R06-TIGRv4S1-000933F (Chr.6: short arm=27626768, long arm=27632040, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 325 a 363 c 374 g 356 t ORIGIN 1 cttcccccac ctccgcctct ctctcgatcc atctcccccc tctctcctct cctctctctc 61 tccgttccca atctgcggag gcggaggcgg agctagggcg cggcgtcgcc ggcgaggagt 121 tccgcaggcg cggtgtggac ggggctcctc tgcttccgca cacggcgggc ggcgacggcg 181 agcagggttg gaggggcggc gcggcgacct cctcgttcct gccttgcctg cctccatctg 241 gtgttggaaa tatcataagt tttgggacaa gcaagagagg acatggagcc atcatcacaa 301 cctcagccgg caattggtgt tgttgctggt ggatcacaag tgtaccctgc ataccggcct 361 gcagcaacag tgcctacagc tcctgctgtc attcctgccg gttcacagcc agcaccgtcg 421 ttccctgcca accctgatca actgagtgct cagcaccagc tcgtctatca gcaagcccag 481 caatttcacc agcagcttca gcagcagcaa cagcgtcaac tccagcagtt ttgggctgaa 541 cgtctggtcg atattgaaca aactactgac ttcaagaacc acagcttgcc acttgctagg 601 ataaagaaga tcatgaaggc agatgaggac gttcgcatga tctccgcaga ggctcctgtg 661 atctttgcga aagcatgtga gatattcata ctggagctga ccctgagatc atggatgcac 721 acggaggaga acaagcgccg taccttgcag aagaatgaca tagcagctgc catcaccagg 781 acggatatgt acgatttctt ggtagatata gttcccaggg atgacttgaa ggaggaggga 841 gttgggctcc ctagggctgg attgccgccc ttgggtgtcc ctgctgactc atatccgtat 901 ggctactatg tgccacagca gcaggcccca ggtgcaggaa tagcgtatgg tggtcagcaa 961 ggtcatccgg ggtatctgtg gcaggatcct caggaacagc aggaagagcc tcctgcagag 1021 cagcaaagtg attaagaaga gtaaatgatc cctgtgaatt gtcaagaagc ttaccacctg 1081 attcagaatt ttacttttag ccaggttgtc gtctattctg aatttatgaa taggattagg 1141 attctctcat ggtagttgca tttctgctgt agtggaaaag gatttatgac atgagagtat 1201 gagactaatg ggtttcagtt actataccgt ttcctgtcaa tccaaaagtt ggcctttgcg 1261 aggccattga tattgaacct aatgtggttg aactgcccat gccaacgttt gtaagctctg 1321 atgtgggtca ttctgtattt catgtttgca tggtttcatg gaatcttctt tgtttagaca 1381 atgaaaatgt tttacattcg tggcatctgc cataacac //