LOCUS AK105030 1632 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-012-F06, full insert sequence. ACCESSION AK105030 VERSION AK105030.2 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1632) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1632 /clone="001-012-F06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 96..1439 /db_xref="Osa1:LOC_Os03g08010" /note="(Rice Genome Annotation Project) elongation factor 1-alpha, putative, expressed" /note="mapping to R03-TIGRv4S1-000294F (Chr.3: short arm=4073677, long arm=4076543, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG97075.1" /translation="MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKM IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAKKK" BASE COUNT 367 a 450 c 428 g 387 t ORIGIN 1 cccctctccc atctcacccc gccgccgccg ccgccgcagc ctcctcaagg ctgctcccat 61 cctctccttc gagttagctt cctccttatt caaccatggg taaggagaag acgcacatca 121 acattgtggt cattggccac gtcgactccg gcaagtcgac caccacgggc catctgatct 181 acaagcttgg aggtatcgac aagcgtgtga ttgagaggtt cgagaaggaa gccgctgaga 241 tgaacaagag gtccttcaag tacgcgtggg tgcttgacaa gctcaaggcc gagcgtgaga 301 gaggtatcac catcgatatc gccctgtgga agttcgagac caccaagtac tactgcacgg 361 tcatcgatgc ccctggtcac cgtgacttca tcaagaacat gatcacgggt acctcccagg 421 ctgactgtgc cgtgctcatc attgactcca ccactggtgg ttttgaggct ggtatctcca 481 aggatggcca gacccgtgag cacgctcttc ttgctttcac tcttggagtg aagcagatga 541 tctgctgctg caacaagatg gatgccacca ctcccaagta ctccaaggcc cgttacgatg 601 aaatcgtgaa ggaagtctca tcctacctga agaaggtcgg ctacaaccct gacaagattc 661 ccttcgttcc catctctggg tttgagggtg acaacatgat tgagaggtcc accaaccttg 721 actggtacaa gggccccacc ttgcttgagg ctcttgacca gatcaacgag cccaagaggc 781 catcagacaa gcccctgcgt cttccccttc aggacgtgta caagatcggt ggtattggca 841 ccgtgcctgt gggtcgtgtt gagactggag tcctcaagcc tggtatggtg gtgacctttg 901 gtcccagcgg cctgaccact gaggtcaagt cggttgagat gcaccacgag gctctccagg 961 aggctcttcc tggtgacaac gtcgggttca acgtgaagaa cgttgcggtg aaggatctga 1021 agcgtgggta cgtggcctcc aactccaagg atgaccctgc caaggaggct gccagcttca 1081 cctcccaggt gatcatcatg aaccaccctg gccagatcgg caacggctac gccccagtgc 1141 tggactgcca cacctcccac attgccgtca agtttgctga gctggtgacc aagatcgaca 1201 gacgatctgg taaggagctg gagaaggagc ccaagttcct caagaacggt gatgctggta 1261 tggttaagat gattcccacc aagcccatgg ttgtggagac cttctctgag taccctcctc 1321 ttggtcgttt tgccgtgcgg gacatgaggc aaacggtggc tgttggcgtc atcaagaacg 1381 tggagaagaa ggacccaacc ggtgccaagg tgaccaaggc tgccgccaag aagaaatgag 1441 cctcgttcaa gtggtgcttt ccatatctgc atttgagata tctagctctt ttagtactcg 1501 ttaagttttg tcgacggtca tttcagttgt tgcattgacc gttaatatct gctcgctttg 1561 tgcactatgt cagtcattta aaactctatt ttctgttcgg tttaaacttg gatgttaaga 1621 cttattattg cc //