LOCUS       AK105030                1632 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-012-F06, full insert
            sequence.
ACCESSION   AK105030
VERSION     AK105030.2
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1632
                     /clone="001-012-F06"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             96..1439
                     /db_xref="Osa1:LOC_Os03g08010"
                     /note="(Rice Genome Annotation Project) elongation factor
                     1-alpha, putative, expressed"
                     /note="mapping to R03-TIGRv4S1-000294F (Chr.3: short
                     arm=4073677, long arm=4076543, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG97075.1"
                     /translation="MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK
                     EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM
                     ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
                     KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE
                     ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE
                     VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII
                     MNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKM
                     IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAKKK"
BASE COUNT          367 a          450 c          428 g          387 t
ORIGIN      
        1 cccctctccc atctcacccc gccgccgccg ccgccgcagc ctcctcaagg ctgctcccat
       61 cctctccttc gagttagctt cctccttatt caaccatggg taaggagaag acgcacatca
      121 acattgtggt cattggccac gtcgactccg gcaagtcgac caccacgggc catctgatct
      181 acaagcttgg aggtatcgac aagcgtgtga ttgagaggtt cgagaaggaa gccgctgaga
      241 tgaacaagag gtccttcaag tacgcgtggg tgcttgacaa gctcaaggcc gagcgtgaga
      301 gaggtatcac catcgatatc gccctgtgga agttcgagac caccaagtac tactgcacgg
      361 tcatcgatgc ccctggtcac cgtgacttca tcaagaacat gatcacgggt acctcccagg
      421 ctgactgtgc cgtgctcatc attgactcca ccactggtgg ttttgaggct ggtatctcca
      481 aggatggcca gacccgtgag cacgctcttc ttgctttcac tcttggagtg aagcagatga
      541 tctgctgctg caacaagatg gatgccacca ctcccaagta ctccaaggcc cgttacgatg
      601 aaatcgtgaa ggaagtctca tcctacctga agaaggtcgg ctacaaccct gacaagattc
      661 ccttcgttcc catctctggg tttgagggtg acaacatgat tgagaggtcc accaaccttg
      721 actggtacaa gggccccacc ttgcttgagg ctcttgacca gatcaacgag cccaagaggc
      781 catcagacaa gcccctgcgt cttccccttc aggacgtgta caagatcggt ggtattggca
      841 ccgtgcctgt gggtcgtgtt gagactggag tcctcaagcc tggtatggtg gtgacctttg
      901 gtcccagcgg cctgaccact gaggtcaagt cggttgagat gcaccacgag gctctccagg
      961 aggctcttcc tggtgacaac gtcgggttca acgtgaagaa cgttgcggtg aaggatctga
     1021 agcgtgggta cgtggcctcc aactccaagg atgaccctgc caaggaggct gccagcttca
     1081 cctcccaggt gatcatcatg aaccaccctg gccagatcgg caacggctac gccccagtgc
     1141 tggactgcca cacctcccac attgccgtca agtttgctga gctggtgacc aagatcgaca
     1201 gacgatctgg taaggagctg gagaaggagc ccaagttcct caagaacggt gatgctggta
     1261 tggttaagat gattcccacc aagcccatgg ttgtggagac cttctctgag taccctcctc
     1321 ttggtcgttt tgccgtgcgg gacatgaggc aaacggtggc tgttggcgtc atcaagaacg
     1381 tggagaagaa ggacccaacc ggtgccaagg tgaccaaggc tgccgccaag aagaaatgag
     1441 cctcgttcaa gtggtgcttt ccatatctgc atttgagata tctagctctt ttagtactcg
     1501 ttaagttttg tcgacggtca tttcagttgt tgcattgacc gttaatatct gctcgctttg
     1561 tgcactatgt cagtcattta aaactctatt ttctgttcgg tttaaacttg gatgttaaga
     1621 cttattattg cc
//