LOCUS AK104603 1720 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:006-308-H06, full insert sequence. ACCESSION AK104603 VERSION AK104603.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1720) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1720 /clone="006-308-H06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 89..1537 /db_xref="Osa1:LOC_Os11g08300" /db_xref="RAP-DB:Os11g0186200" /note="(RAP Annotation release2) Similar to Aldehyde dehydrogenase (EC 1.2.1.3)" /note="(Rice Genome Annotation Project) aldehyde dehydrogenase, dimeric NADP-preferring, putative, expressed" /note="mapping to R11-TIGRv4S1-000215F (Chr.11: short arm=4371272, long arm=4375860, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG96824.1" /translation="MAEEEVAAVVGELRGSFRSGRTRAAEWRAAQLRGIVRMVEEREG DISDALHSDLAKPRMESYLHEISLAKAACTFALKGLKNWMKPEKVPAALTTFPSTAQI VSEPLGVVLVISAWNYPFLLSIDPVIGAIAAGNAVVLKPSEIAPATSALFAKLLPEYV DSSCIKVVEGGVPETTALLEQKWDKIFYTGSGNVGRIVMAAAAKHLTPVALELGGKCP AIVDSNTDLHVTMKRLAVGKWGCNNGQACIAPDYVITTKSFAPELVDSLKRVLKRFYG EDPLQSEDLSRIVNSNHFRRLTNLIEDKKVAQKIVYGGQTDEKQLKIAPTVLLDVPLD TTLMAEEIFGPLLPIVTVDKIEDSIQFINSRTKPLAAYLFTKDKKLQEEFVSNVPAGG MLVNDVALHLANPHLPFGGVGDSGIGSYHGKFSFDCFTHKKAVLIRGFGGEATARYPP YTIEKQKILRGLINGSFFALILALLGFPKERR" BASE COUNT 439 a 395 c 453 g 433 t ORIGIN 1 ggctgcttcc tcctgactcc tctcctgcat tctctcgctt ctgacggcgg caactaagct 61 ttttgggatt cgattcgagg aggaggtgat ggcggaggag gaggtggcgg cggtggtggg 121 ggagctgagg gggagcttca ggtccgggag gacgagggcg gcggagtggc gggcggcgca 181 gctgcggggg atcgtgagga tggtggagga gagggagggg gacatctccg acgcgctcca 241 ctccgacctc gccaagcctc gcatggagtc ctacctccac gagatatcat tggcaaaggc 301 agcctgcaca tttgccttga aggggttgaa gaattggatg aaacctgaga aggtacctgc 361 cgccctcact acattcccat caactgcaca aattgtgtca gagcctcttg gtgtcgtcct 421 agtcatctca gcatggaact accctttctt gctctccatc gacccagtca taggagcaat 481 tgctgctggg aatgccgttg tgctgaagcc atcagaaatt gcaccagcca cctcagcatt 541 gttcgccaag ctgctacctg aatacgttga tagctcttgc ataaaagtgg tggagggagg 601 cgttccagaa acaaccgcac tcttagaaca aaagtgggat aagatcttct acacaggtag 661 cggaaatgtg ggccgcatag tgatggcagc agctgcaaag catcttaccc ctgtggctct 721 agagcttggt ggaaaatgcc ctgcaattgt tgattctaat actgatcttc atgttaccat 781 gaagaggcta gctgttggca agtggggatg taacaacggg caggcatgca ttgctccaga 841 ctacgttata acaacaaaat catttgctcc agagctggtt gactctttaa aaagagtttt 901 gaaaaggttc tatggggagg atcctttgca atcagaagac ttgtcccgta ttgtgaattc 961 taaccatttc cgtagattga caaatttgat agaggataag aaagtcgccc aaaagattgt 1021 atatggtggc caaacagatg agaagcaact aaaaatagct cctactgtgt tgttagatgt 1081 tcctcttgat acaacactca tggcagagga aatttttggt cccttacttc ccattgtaac 1141 agttgacaag attgaagata gcatccagtt catcaactca aggaccaagc cacttgcagc 1201 ctatcttttc accaaggaca agaaactgca agaggaattt gtgtccaatg tcccagcagg 1261 aggaatgctt gtaaatgatg ttgccctgca tctcgccaat ccgcacctgc catttggcgg 1321 agtcggcgac agcgggatcg gctcctacca tggcaaattc agcttcgatt gtttcaccca 1381 caagaaggcc gtcctgatcc gcggcttcgg aggggaggca actgctaggt acccacctta 1441 cacgattgag aagcagaaga tcctgagagg actgataaac ggcagcttct ttgcactgat 1501 tcttgccctc ctgggcttcc ccaaagagag gcgttagaaa actttcagta gtttcagtac 1561 agtacttgtg catttgagtg agtgcaggcc atgctgtcaa tggaagccat ttcctgcatg 1621 ttgttttaca caggtgtaca ttatatttgt cggattttct tgtgtaactt attgaaaatt 1681 ctactacaca gggttacata aataaacatg atttgtcagt //