LOCUS AK103407 2424 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033128D14, full insert
sequence.
ACCESSION AK103407
VERSION AK103407.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2424)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2424
/clone="J033128D14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2424
/db_xref="Osa1:LOC_Os03g57940"
/note="(Rice Genome Annotation Project) ATP binding
protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-001604F (Chr.3: short
arm=32938488, long arm=32945584, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 646 a 522 c 658 g 598 t
ORIGIN
1 gtcacgcgag cgacgcgggc gctccacgat ttctctgcct cccccccccc ctcggtctcc
61 tcctccccca ccaccaccgc acgcttcccg aggcgccgcc ctccgccgcc gcgggcatcc
121 gcttccgacg acgatattgg aaggagcacc gaagggtgta gcacaaggcc gagttgcatg
181 gggcgataat gccagagttg cggggtggtg tttggagagc tcgtctgagg tccaagaagg
241 tttacgacgt ccaggacgca gatccagctg cgagtccggt gtcgccagct ccgcggggga
301 ggactggaag gcgcggcggt gctgcggctg gcagaggcaa caagacagtt gctgagggag
361 gagggaggaa agctctgaag cctagaggaa aggggtgcag ggctgttgat ttgtgtaagg
421 atcaaccttg caaggacctc cctgaagtta ttgctagaaa ggcggttacc ggcaaagccc
481 aggaggacct tggtttgaac aaggtagctg acagagctgc gaacttgatg atggacggcg
541 aaagtggaga caaatttgct gcggcagaag atgaatccac tacaacacca gttcctgagc
601 gggttcaagt aggcaattcc ccagagtata taactgatag gaagttgggt aaaggtggat
661 ttggtcaggt ctatgttggt cgaagagtat ctggtggagg ttctcgcacg ggtccagatg
721 cgcaagaggt tgcgcttaaa tttgagcacc gaagcagtaa aggatgtaac tatggccctc
781 catacgagtg gcaggtttac cacactctca atggttgtta tggcatacca tcagtccact
841 ataagggtcg tttgggagac tactacattc ttgtaatgga tatgcttggt cccagcctct
901 gggatgtgtg gaattcagtg ggacaggcga tgtctgccca tatggttgct tgcattgctg
961 tggaagcgat atcaattctt gagaagcttc actctaaagg gtttgtacat ggtgatgtca
1021 aaccagagaa ttttttgctt ggtcatcctg ggtcagttga tgagaagaag cttttcctga
1081 ttgatcttgg tttagcatcc aggtggaaag aagcatcatc tggtcagcat gttgactatg
1141 atcagaggcc agatgtcttt aggggaacaa ttagatacgc tagcgtccat gcccacttag
1201 gtcgtacagg tagcaggagg gatgatttag agtcactggc ttacacccta atctttttaa
1261 taagagggag attaccttgg caagggtatc agggagataa caagagtttt cttgtttgta
1321 agaagaaaat ggctacttca ccagagttgc tgtgttgctt ctgtccagct ccgttcaaac
1381 attttctaga gatggtcact agcatgaaat ttgacgaaga gccaaactat ccaaaactta
1441 tttctctctt tgatggtttg attgaagggc ctgcttcaag gcccatcaga attgatggag
1501 ctctgaaggt tgggcaaaaa cgtggaagaa tggttgtaaa tcttgacgat gatgaacagc
1561 ccaagaagaa agttaggttg ggaagcccag caactcaatg gatctcagtt tataatgcta
1621 ggcggcccat gaagcagaga tatcactata atgttgctga ttcaaggctg catcagcata
1681 tagaaaaagg caatgaagat gggctgtaca ttagttgtgt ctcttcttcc gcaaattttt
1741 gggctctcat aatggatgct gggactggct tttgttccca agtttatgag ctttcacaag
1801 tgtttctgca caaggattgg attatggagc agtgggagaa gaattattac ataacggcaa
1861 tagcaggagc aaccaatgga agctcattgg ttgtaatgtc caaaggaact ccatacacac
1921 agcagtcata caaagtcagt gaatcctttc cttacaagtg gattaacaaa aagtggaaag
1981 aaggtttcca tgtgacatct atggctactg ctggaaaccg ttggggagtt gtcatgtcaa
2041 gaaatgcagg ctattcccat caggtggtag agttggactt tctatatcca agtgaaggga
2101 tccatcggcg atgggagaca ggttacagaa taacttcgac tgcagcaact cctgaccaag
2161 ctgccttcat cttgagcata ccaaagagga agccaatgga cgagacacaa gaaactcttc
2221 gaacttcctc ctttcccagc aaccatgtca aggaaaaatg gtcaaagaac ctatacatcg
2281 cttcaatctg ctacggccgg accgtatgct gacagcttca acatttcgaa gctccaatgt
2341 gaagccatgt ctagctacta ctagcatttt gcagtgagct gccaaccgat caaatctccc
2401 ttgattggga gatctgaagc aagg
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