LOCUS AK103203 2400 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033122C24, full insert
sequence.
ACCESSION AK103203
VERSION AK103203.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2400)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2400
/clone="J033122C24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 385..2274
/db_xref="Osa1:LOC_Os04g43300"
/db_xref="RAP-DB:Os04g0512400"
/note="(RAP Annotation release2) Similar to Midline 1
protein (Tripartite motif protein 18)"
/note="(Rice Genome Annotation Project) ATBRCA1,
putative, expressed"
/note="mapping to R04-TIGRv4S1-000757R (Chr.4: short
arm=25392576, long arm=25396728, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95951.1"
/translation="MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSC
SKCATTRTMDGYSCAICKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQAD
IPVAKTSFQGTPESGNRNGAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPA
LETRGAADVTAMPTILVQKGPCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKRE
PNTANDDNRELKRQKSTDQDDRQPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLED
NQAWKPNVLHVHEKCIEWAPQAFFTGDIANNLEPELARASKIKCSVCGLKGAALGCLV
KSCRKSFHVPCAHGISGCRWDDENFVMLCPSHSSKKLPCERSKSKNKKTSLQRSSSDT
MLDDLNSPSTIHMDGLWTASPFLTSEWVICGSALSSQEKEILDQFEHQTGITVTNGWR
SNVTHVIANTDECGACARTLKVLMAILAGKWVLNINWLKACMEAKEPVPEEPYEISSD
VHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKVHLEDLITAAGGSILDKAD
LSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAEELAATIGSRAVPHTCVLDSIASCT
VQLTM"
BASE COUNT 627 a 589 c 594 g 590 t
ORIGIN
1 ggggggcgcg cgcctgcgcg cctctctccc gcagtcccgc ccgcccgcgc gcgcgcgcgg
61 cgctcgaaac aggcaatcgc tttccccatc caaaaccagt ccaccctcgc gccgcggggg
121 aaaaccccga aaaattttct tcttcccgcc gatggcacgc cggttcagac ccgcgcccgc
181 acgcggcggc atccaaacat tttttttcca gccgccgcca ccccttccct ccaattttcg
241 agcgtggcca cgcgtatttc agtggctccg gagctagctt aattagcagt gcccacaagc
301 caccgtctcc gcagtccgca cacaggttct tcaatccttt gagagagagc gagagcgaga
361 gcgagaccgt gcggccgtgc agggatggag agcttcagga ggttcctgaa cccgctggtg
421 ctcaacctgc agaagatgga gctggagctc acctgccccg tctgcctgaa gttgctcaac
481 gcgcctacca tgctgccatg ttaccacact tcctgcagca agtgtgctac tacacggacc
541 atggacggtt acagctgcgc gatttgcaaa tcagcttatc gttctcaaga cctaaggcct
601 gcctctcacc tcgaggcaat agtgaacatc cacaggagcc taagctctac agtcagcagc
661 atggtcactc agcaggaggc tcaagctgat attcctgttg caaagacatc atttcaagga
721 actccagaat cgggaaacag aaatggagca gagaaatctg atcaggtgaa atcatacacc
781 ccggttgctt ctaaactggc atataaccag tcaactgggc ttgcatatgg aaatgtggac
841 ggcgtgaaag aaagaaatcc tgcattggag actagaggtg cggctgatgt gactgctatg
901 cccacaattc ttgtgcagaa gggaccctgc cgatctcaat cttctgatgg ccctagggat
961 ctggattgcg acagcaatga ccttgaagga gagctgataa caagcagatc atctcctcaa
1021 agtgtcttga aaagagaacc aaatacagcg aatgatgata atagagaatt aaaaaggcaa
1081 aagtccactg atcaggatga tagacaacca gctgttgctg gtgcttggaa atgtgaattt
1141 tgtcactctt ccaaaaccac tgagagtact ggccctctgt cccattatct gcatggtgag
1201 ccattagagg ataaccaagc atggaaacca aacgttttac atgttcatga gaagtgcatt
1261 gaatgggccc ctcaagcgtt ctttactggt gacattgcaa ataacttgga gcctgagttg
1321 gcccgtgctt ctaagatcaa atgcagtgtt tgtggactaa aaggtgcagc ccttggctgc
1381 cttgtcaaga gctgccgcaa gagctttcat gttccatgtg cccatgggat atcaggctgc
1441 cgatgggatg atgagaactt tgttatgctg tgtccttctc attcctcgaa gaagttgcca
1501 tgtgagagat caaagtcaaa aaataagaag accagcttgc agcgatcatc ttccgataca
1561 atgcttgatg acctgaactc accatctaca atccatatgg atggactttg gactgcttca
1621 ccttttctca ctagtgaatg ggttatatgt ggatctgctc tctctagtca ggagaaggaa
1681 atcttggacc agtttgagca ccaaactggc atcactgtaa ctaacggttg gaggtcgaat
1741 gtgactcatg tgattgctaa tacggatgaa tgtggggcat gtgccaggac actcaaggtt
1801 ctcatggcca tactagctgg gaaatgggtt ctgaatataa actggctgaa agcttgtatg
1861 gaggctaaag aaccagtccc agaagagcct tatgagatca gttctgatgt tcatggctcc
1921 tttgatggcc ctcgcatggg aagactacga gcaatgcaaa atgcaccaca tctgtttgca
1981 ggattgacct tttacttcag tggccatttc atgcccaatt acaaggttca ccttgaagat
2041 ttgatcactg cagctggggg atcaatcttg gacaaggctg atctctctag cacatccttg
2101 ataatttaca gcatggagcc accacaagga agtgatcctg atacccttaa tgaggtcatc
2161 agaaagagga aggctgaggc tgaagaattg gcggcaacga ttggctccag ggctgttcct
2221 catacatgtg ttctggattc tattgcatca tgcacagtgc aattgaccat gtgatgctgt
2281 atcttaggtt aggagttagg atgttactga tatgttcttg agtgaaaata tcttctagat
2341 gttgtaagtt gtaacgtgag caagcaattt aattcaaata atattgatat gtctctttcc
//