LOCUS AK102729 2015 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033105O21, full insert
sequence.
ACCESSION AK102729
VERSION AK102729.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2015)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2015
/clone="J033105O21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 121..1764
/db_xref="Osa1:LOC_Os10g05690"
/note="(Rice Genome Annotation Project) auxin
transporter-like protein 3, putative, expressed"
/note="mapping to R10-TIGRv4S1-000093R (Chr.10: short
arm=2833853, long arm=2839952, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95694.1"
/translation="MASGSSGGGYADEKGPGAATMQALGLQQQHGGGGEVEEESSEMG
EKTAARTRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYG
LLGSWTAYLISILYLEYRTRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTF
LLFGSVIQLIGCASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM
TTYTAWYIAVASLIHGQVEGVAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWR
PQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLML
IHQFITFGFACTPLYFVWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPIN
SAVGSLLVSFTVYIIPSLAYMVTFRSPQSRQNAVERPPRFAGGWTGAYVINSFVVAWV
LVVGFGFGGWASITNFVHQVDTFGLFAKCYQCPPHPAAAALSPPGAIAPAPASMLPPF
NSTAAGIFAAPVPSPAPAPAPMHFVLGHHHHHRHHRHGL"
BASE COUNT 345 a 671 c 581 g 418 t
ORIGIN
1 gaccacacac acccacactg gcagcagctc atacacatag ctagctcagc tgagacacac
61 acacacacag tgagtagttc agctcaaagc tagcatcagc agcagagcta attaacaaac
121 atggcgtccg ggagcagcgg cggcggctac gcggacgaga aggggccggg ggcggcgacg
181 atgcaggcgc tggggctgca gcagcagcac ggcggcggcg gagaggtgga agaggagtcg
241 tcggagatgg gggagaagac ggcggcgagg acgcggctgt cggggctgct gtggcacggg
301 gggtcggcgt acgacgcgtg gttcagctgc gcgtcgaacc aggtggcgca ggtgctgctg
361 acgctgccct actcgttcgc gcagctgggc atggccagcg gcctcctctt ccagctcttc
421 tacggcctcc tcggcagctg gaccgcctac ctcatcagca tcctctacct cgagtaccgc
481 acccgcaagg agcgcgacaa ggtcgacttc cgcaaccacg tcatccagtg gtttgaggtg
541 ctggatgggc tactggggag gcactggagg aatgtgggac tggccttcaa ctgcacgttt
601 ttgctgttcg ggtcggtgat ccaactgatc gggtgtgcca gcaacatcta ctacatcaac
661 gaccatctgg acaagcggac atggacgtac atcttcggcg cctgctgcgc caccaccgtc
721 ttcatcccgt cattccacaa ctaccgcatt tggtccttcc tcggcctcct catgaccacc
781 tacaccgcct ggtacatcgc cgtcgcctcc ctcatccacg gacaggtgga gggtgtggcg
841 cactctgggc ccacaagcat cgtgctctac ttcacggggg ccaccaacat cctctacacc
901 ttcgggggcc acgctgtcac cgtggagata atgcacgcga tgtggcggcc gcagaagttc
961 aaggcgatct acctgctggc gacggtgtac gtgctgacgc tgacgctgcc gtcggcgtcg
1021 gcggcgtact gggcgttcgg ggacgcgctg ctgacgcact cgaacgcgct ggcgctgctg
1081 ccgcggacgc cgtggcgcga cgccgcggtg gtgctcatgc tcatccacca gttcatcacc
1141 ttcggcttcg cctgcacccc gctctacttc gtctgggaga agctcgtcgg cctccacggc
1201 tgcccctccc tctgcaagcg cgccgccgcc cgcctccccg tcgtcctccc catctggttc
1261 ctcgccatca tcttcccctt cttcggcccc atcaactccg ccgtcggctc cctcctcgtc
1321 agcttcaccg tctacatcat cccctccctc gcctacatgg tcaccttccg ctccccgcaa
1381 tcccgccaga acgcggtgga gcggccgccg aggttcgccg gaggatggac gggggcgtac
1441 gtgataaact cgttcgtggt ggcgtgggtg ctggtggtcg gcttcggctt cggcgggtgg
1501 gcgagcatca ccaacttcgt ccaccaggtc gacaccttcg gcctcttcgc caagtgctac
1561 cagtgcccgc ctcaccccgc cgccgccgcc ctctcgccgc cgggtgccat cgctccggcg
1621 ccggcctcga tgctgccgcc gttcaactcc accgccgccg gcatctttgc cgctccggtg
1681 ccgtctcctg ctccggctcc ggcaccgatg catttcgtcc ttggtcacca ccaccatcac
1741 cggcaccacc gccacggcct ctagctaatt aatcgagatc aatcaagatc atgattatca
1801 gaggttgggt ttgcattatt gcactagttt ttagcgagct actagctagt tgatcatcac
1861 tgcaagattg ttaattagcg ctagtaatta gtaaaagtaa gcctcttttc ctaatcctat
1921 tgtatgcttt gcttctttct tcttcttctg gttactgaga gagagtgaga gtgagaatgt
1981 ttggtggtgg ggtatgcatg tcagagacac gtttc
//