LOCUS AK102695 2757 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033103F21, full insert
sequence.
ACCESSION AK102695
VERSION AK102695.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2757)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2757
/clone="J033103F21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2757
/db_xref="Osa1:LOC_Os06g02180"
/note="(Rice Genome Annotation Project) CSLD2 - cellulose
synthase-like family D, expressed"
/note="mapping to R06-TIGRv4S1-000036R (Chr.6: short
arm=659288, long arm=662352, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 638 a 668 c 678 g 773 t
ORIGIN
1 gtatattcct tgcatggaga attaagcaca agaatgagga tgcaatgtgg ctatggggca
61 tgtctgttgt ttgcgaactc tggtttggcc tctcttggct cttggatcag ctgccaaagt
121 tgtgccctgt taaccgagca actgaccttg ctgtcctgaa agataagttt gagaccccga
181 cgccatcaaa tcctaacgga agatctgacc tgccggggct cgatatattt gtgtctactg
241 ctgatccaga aaaagaaccc ccattggtca cagcaaatac tattctgtcc atccttgctg
301 ctgattatcc tgttgagaag ctttcttgct atgtttctga tgatggaggc gctctcctga
361 catttgaagc aatggctgaa gccgctagct ttgcaaacat gtgggttcct ttctgtcgca
421 aacatgacat tgagcctcgc aacccagaga gctactttaa tctgaagagg gacccataca
481 agaacaaggt ccgttctgat tttgtcaagg acagaagaag ggtgaagagg gagtacgacg
541 agttcaaggt caggatcaat agcttgcctg attcaatccg tcgccgctcc gatgcatatc
601 atgccaggga ggaaatcaag gccatgaagc ggcaacgaga ggctgctctc gatgacgtgg
661 tggaggctgt taaaatccct aaagctacct ggatggctga tggcacgcat tggcctggta
721 cctggattca gccctctgct gagcatgctc ggggtgacca tgctggaata attcaggtaa
781 tgctgaaacc tcctagtgat gatcccttgt atggaaccag cggtgaagaa ggcagacctc
841 ttgatttcac tgaggttgac atccgtttgc caatgttggt ctatgtgtcc cgagagaagc
901 gtcctggtta tgatcacaac aagaaggctg gtgcgatgaa tgcgttggtc cgctcatctg
961 ctgtcatgtc aaatggacct ttcatcctca accttgattg tgatcactat gtttacaact
1021 cacaagcttt ccgtgaaggc atgtgcttca tgatggatcg tggtggtgac cgtattggct
1081 atgtccagtt ccctcaacgg tttgagggca ttgatccatc agatcgatat gctaaccaca
1141 acactgtctt cttcgatgtc aacatgcgtg cacttgatgg tatcatggga ccagtctacg
1201 tcggcactgg atgtcttttc cgtcgcatcg ctttgtatgg atttgaccca ccgcgctcca
1261 aggaacatag tggttgctgc agctgttgct tcccccagag gcgcaaggtt aaaacttcca
1321 cagttgcatc tgaagagagg caggctttga gaatggcaga ttttgatgat gaggaaatga
1381 acatgtcaca atttcccaag aagttcggta attcaaactt cctcatcaac tctatcccaa
1441 ttgctgaatt ccaagggcga cctcttgctg accatcctgg agtcaaaaat ggacgtcctc
1501 ctggtgctct caccgtccct cgcgaccttc tcgatgcttc cacagttgct gaggctatca
1561 gtgtcatctc atgctggtat gaagataaga ctgagtgggg tcagcgtgtt ggatggatct
1621 atggttcagt cacagaggat gtggtcactg gttacaggat gcacaaccgt ggatggaaat
1681 cagtttactg tgtcaccaaa cgtgatgctt tccgtggcac tgcaccaatc aaccttactg
1741 accgtcttca tcaggtgctc cggtgggcta ctggttcagt ggaaatcttc ttctcccgca
1801 acaatgcact acttgcaagc cgaaagatga agtttcttca gaggattgca tacctgaacg
1861 ttggcattta ccccttcaca tcaatcttcc tcattgtcta ctgcttcctg ccagccctgt
1921 ccctcttctc gggacagttc attgtgcgga cgctaaatgt gaccttcctg acctatctgc
1981 tcgttatcac tctgacaatg tgcatgcttg cggtgctcga gatcaagtgg tcaggcatca
2041 gcttggagga atggtggagg aatgagcagt tctggctaat cggaggaact agcgcccacc
2101 ttgctgctgt tcttcagggt cttctcaagg tgattgctgg tatcgagatc tccttcacgc
2161 tgacatccaa atctggagga gatgaagcag acgacgagtt tgctgatctc tacatcgtca
2221 agtggacatc actcatgatc ccaccgatcg tcatcatgat ggttaacctg atcgccatcg
2281 ctgtcgggtt cagcaggaca atatacagtg aaatccctca gtggagcaag ctcctcggcg
2341 gcgtgttctt cagcttctgg gtgctggctc acctttaccc cttcgccaag gggctaatgg
2401 gaaggagagg acgaacaccg accatcgtct tcgtctggtc tggcctcctt gccatcacca
2461 tctcattgct gtgggttgcc atcaatccgc cgtcacagaa ctcgcagata ggcggctcct
2521 tcacattccc ctgagcttcc tcatgaacat gaaccttttg tatgatgaat tataagagtg
2581 gtcccagtag cagttgtcct tgctgttgga caagtaaatt ctttacctat gtttacttag
2641 gtttttcttt tttttttttg ggtcgaagat gatactatta tgaatcatgc atgatactag
2701 ttcttttgtt cgtttttgtg ccaaaatgag aagaggttct gtttggacct gaacatc
//