LOCUS AK102173 2525 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence. ACCESSION AK102173 VERSION AK102173.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2525) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2525 /clone="J033086I18" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 288..2186 /db_xref="Osa1:LOC_Os02g57650" /db_xref="RAP-DB:Os02g0822400" /note="(RAP Annotation release2) No apical meristem (NAM) protein domain containing protein" /note="(Rice Genome Annotation Project) NAC domain-containing protein 78, putative, expressed" /note="mapping to R02-TIGRv4S1-001606F (Chr.2: short arm=35297324, long arm=35301360, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG95424.1" /translation="MSQSPPDSSSAAAVPLAPGFRFHPTDEELVSYYLRRRILGRRLR IDAIAEVDLYRLEPWDLPSLSRIRSRDAQWYFFARLDRKVTGAGAGGRGGPGNRTNRA TPRGYWKTTGKDRDVHHRGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRLLDADGTQD LHVVCRIFQKNGSGPQNGAQYGAPYLEEDWEEEDDAIENMPASGAFAEMAAVTDTADE STEEDGNFSLKTNDEPLQTQEYQPEITPVKAQGSNEETNGGGYSCDVFSLDEILQEPE NVCKNEEQNAIDDKFTIAELSGYPRQDDGYVGENGPVNWIDPSNGDNTNWPLRAYSTQ NHVNGTLSADGFFDTVNGTNSYSGPSDNQNLYLQDDGLTSSHQVGDNMPFYDASSNHK WVDGKDDYLNLNDLLYPPAENQPLFDAGDDLMAYFDATEDDFKFDIMGTEDSNSQLPD MSNFVQKDDNNNKFTLDGISNTALYGASSSGSHGNMYPDTAVPDMPMDDTVDKSFGKR LASMLGSIPAPPAMASEFPPSTGKSVVPLSAVNPSSSIRVTAGIIQLGGITFTGSTEH LQKNGDFNLLLSFTVEGDVSTKSIGFEPDTQMSTTPMVLRSGMYLFFVSAMILMLSYK VGLCIYSR" BASE COUNT 620 a 666 c 596 g 643 t ORIGIN 1 gctattatta ttttctttct catcacgcgg ctgcgtccgt atcgcgactt ttatcctctc 61 ctccccaact aactcggcgt tcgccatctc gtgtcgactt cctcctcaaa accctaattc 121 catccaccgc tcgatccaat ctaccctctc tctcgattct caattctcaa ttctccctgc 181 aaaattccca atcctccgtg cagaattaga attatgcggg attgatcccc tcccacggga 241 tctccaatat catatccatc cagaaattga aattcccctc gccgccgatg agccaatcgc 301 cgccggactc ctcctccgcg gcggcggtgc ccctggcgcc ggggtttcgc ttccacccca 361 ccgacgagga gctcgtctcc tactacctcc gccgccgcat cctcggccgc cgcctccgga 421 tcgacgccat cgccgaggtc gacctctacc gcctcgagcc gtgggacctc ccctccctct 481 cccgcatccg gagccgcgac gcgcagtggt acttcttcgc ccgcctcgac cgcaaggtca 541 ccggcgccgg ggccggcggc cgcggcggcc ccgggaacag gaccaaccgc gccacgccgc 601 gcggctactg gaagaccacc gggaaggacc gcgatgtcca ccaccgcggc aagctcgtcg 661 ggatgaagaa gacgctcgtc ttccactccg gtagggcgcc caagggccag aggaccaact 721 gggtcatgca cgagtaccgc ctcctcgacg ccgacggcac ccaggatctg catgtggtgt 781 gtagaatctt ccagaaaaat ggatctgggc cacaaaatgg tgcacagtac ggtgcgccat 841 acttggagga agattgggaa gaggaggatg atgcaattga gaacatgcct gccagtggcg 901 ctttcgctga aatggctgca gtcacagata ctgcagatga gtcgactgag gaagatggga 961 atttctccct taaaactaat gatgagcctt tacaaaccca agaataccag ccagagataa 1021 ctcctgtgaa agctcaaggt tcaaatgagg agaccaatgg cggtggttac agttgtgatg 1081 ttttttctct ggatgagatt ttgcaggaac ctgaaaatgt ctgcaaaaat gaagagcaga 1141 atgccattga tgacaagttc actatcgcag agttatctgg atacccaagg caagatgatg 1201 gctatgtagg cgagaatggt cctgtgaatt ggattgaccc ttcaaatggt gataatacaa 1261 actggccttt gagagcatat agtactcaga accatgtcaa tggaacactt agcgctgatg 1321 gtttctttga cacggtgaat ggtaccaact catattcagg tccttcagat aaccagaacc 1381 tgtatttgca agatgatggc ttgacttctt ctcatcaagt gggcgataac atgccatttt 1441 atgacgcatc atctaatcac aaatgggtag atggaaagga tgattatttg aatttgaatg 1501 acctcctcta cccgccagca gaaaatcaac ccctgtttga tgctggggat gacctgatgg 1561 cttacttcga tgccacggag gatgatttca aatttgatat tatgggcaca gaagattcta 1621 attctcaact tccagacatg tcgaactttg tccaaaagga tgataacaac aataagttta 1681 cattagatgg gatctctaat accgctttgt atggtgcttc ttcatctgga tcccatggca 1741 atatgtatcc agacactgca gtaccagata tgccgatgga tgacactgtt gacaaaagtt 1801 tcggaaagcg ccttgccagc atgctgggtt caattccagc tccacccgca atggcttcag 1861 agttcccgcc gagcacagga aaatctgttg tcccacttag tgctgtcaac ccgagtagct 1921 ctatccgtgt cactgcaggc attatccaac tcggtggtat cacttttact ggtagcaccg 1981 agcacctgca gaagaatgga gatttcaatt tgctcctctc tttcactgtc gagggcgacg 2041 tctcaaccaa atccattggt tttgaaccgg atacgcagat gagcaccacg ccaatggtgt 2101 tgcgcagcgg catgtatctt ttcttcgtat cggcgatgat tctcatgttg agctacaaag 2161 ttgggctgtg tatctacagc aggtaagtta tagtagtttt tgttgcccca ggctgtttat 2221 taaattgaag gagtcataca gagtccactc gacgtagagg gaactgcctg cgatttggac 2281 agtttggttc tttacattgt tatagttggt ataccgttct gacagttgaa agatacatag 2341 caataaactc tggaattgga gaaactagag ttacacgaat ttggtgctga aacttttgtt 2401 ggtggcatgt actgtataat ttactctatt tatttatttc acccaattct gggaggctgt 2461 aagcgttccc cgatcgatgt aagctgatct gaaacctgaa tacgcgctct tcatttttca 2521 taccc //