LOCUS AK101575 1695 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033050J21, full insert
sequence.
ACCESSION AK101575
VERSION AK101575.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1695)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1695
/clone="J033050J21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1695
/db_xref="Osa1:LOC_Os08g01410"
/db_xref="RAP-DB:Os08g0104900"
/note="(RAP Annotation release2) Protein of unknown
function DUF6, transmembrane domain containing protein"
/note="(Rice Genome Annotation Project) organic anion
transporter, putative, expressed"
/note="mapping to R08-TIGRv4S1-000017R (Chr.8: short
arm=262457, long arm=265730, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 423 a 414 c 364 g 494 t
ORIGIN
1 gacgtactat gctagactag acaacaccca aaggcaaaga gagggaggga atcatctgct
61 cacaccaacc gaactcgcaa cctaaacacc tccctcttcg attcacttca tcttcctctt
121 ctcttctcgt ctcttgtagt agtatatatt tataaagccc ccaaacaaaa gagaagacaa
181 ctgaattagt tcgatcgatg caggcaggca ggccttctag ttctacaaag atgcctctaa
241 tggatcgttt tcctttccta tcgatggctt gattgataca aagccggttt tttcactcct
301 cgggcgtgcg tttcttgaca ccggccggat tgatctatca tccatccatc gagtcgagtc
361 gagatcgatc ttgatctcga tctcgatcga tggagaaagc caagatggga gacgttgcca
421 ccatccgagc cgttctggcg atcctccaat ggtggggctt caacgtcacc gtcatcatca
481 tgaacaaatg gatcttccag aaattggagt tcaagttccc tcttactgtc tcgtgtgtcc
541 actttatatg ctcttcgatt ggagcttaca tcgcaatcaa aattctcaag atgaaaccac
601 tgattgaagt tgccccagag gatcggtgga gaagaatatt cccaatgtca tttgtgttct
661 gcataaacat tgtactggga aatgtcagcc tgagatatat tccagtctcc ttcatgcaga
721 ccataaaatc tttcacccct gcaacgacag ttattctgca gtggttggtc tggaggaagt
781 atttcgagtg gcgcatatgg gcttctctgg taccaatagt gggaggaatc atgttaacat
841 caataactga gcttagtttc aacatgtttg gtttttgtgc tgctatggtt ggttgcctgg
901 caacatctac caagaccatc cttgcagagt ctctactcca tggatacaaa tttgatagca
961 ttaacactgt gtactacatg gcgccatttg caaccatgat actgtcagta ccagcgattg
1021 tgctggaagg gagtggcgtc atcaattggc tctacacgta tgattccatc gtccctgcac
1081 tgatcatcat caccacctcc ggagtactcg cattttgcct caacttctcc atcttctacg
1141 tcatccattc cacaacggct gtcaccttta acgtagccgg caacctgaaa gttgctgtgg
1201 ctgtgttggt gtcgtggatg atcttccgga acccgatctc ctcgatgaac gctgtcgggt
1261 gcgcaatcac gctcgtcggc tgcaccttct atggctatgt gaggcatctc atctcgcagc
1321 agagcgttaa ttcgagccca cgcacgccga ggagccggat ggagatgctt cccctcgtag
1381 gagacaagca agagaagatt taattggcca ccaaattaaa acaagttgat actcaaaaga
1441 ggagggaatt gttggtgcat gatcaatagg aataaaggag catcatctaa cagctttcag
1501 gattaatcct gaggcacttt tgtcatagaa aattattcag agttttcagt tgagttgttc
1561 gtatagagct aatagaactt ccttcttgtc atctgaacat gctggggtgc tcctcagctg
1621 tatctctctc tctctctctc tttctattct tttcttcctt tttctcacag gattaaaaga
1681 tttttgtttg ctcgt
//