LOCUS AK101554 3443 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033050A06, full insert
sequence.
ACCESSION AK101554
VERSION AK101554.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3443)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3443
/clone="J033050A06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1891..3024
/db_xref="Osa1:LOC_Os09g29404"
/db_xref="RAP-DB:Os09g0469400"
/note="(RAP Annotation release2) Similar to
Isoamylase-type starch debranching enzyme ISO3"
/note="(Rice Genome Annotation Project) glycogen operon
protein glgX, putative, expressed"
/note="mapping to R09-TIGRv4S1-000514R (Chr.9: short
arm=17856350, long arm=17867668, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95120.1"
/translation="MFWFNLGNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASV
LCRGPDGCPLDAPPLIKEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGK
YRDDLRRFIKGDPGMKGVFATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSY
NLKHNDANGEGGCDGCNDNFSWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPM
MLMGDEYGHTRYGNNNSYGHDTCINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRR
DRFLNKNDVTWHEDCWENQESKFLAFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHH
KCWNRVVDTNLESPNDIVPEGVPFTGPKYRIAPYSSILLKAKP"
BASE COUNT 875 a 768 c 800 g 1000 t
ORIGIN
1 ggctccgctc caccgcgtgt cccactccca ccacccccgc tctcccgtcc gtccgcgcgc
61 ttccccccat gcgagatcac cgtctcctcc gcctcctcct cgttggctcg tcctcttccc
121 ccatccgcct ctctctctct ctctctttct ctctctctcc agtctcctcc actctcctct
181 cttcgagagc cgctcgcgac gcgagcctct tggagcgcgc gccctataac taggcacccg
241 tgtccccgtc ccggatctcc cccccacccg tcgctccgcc ccgtccccat tttggatgga
301 ttccattggt ataaatcgcg ccccgctggg ttcctcctcc tccgccgccg ccgtgacagc
361 tcgtcgaggc atcgcgctcc gcccggctcg ccgctccgtc gcgagtacga accgtgtggg
421 tgtggcgacg atcggcttcg gggacgcgtc tgggctcaga gcgtgttctg agaaggttag
481 gcgatttgat tctgtacgaa gcaccacggc gagagctcag aacgggaacg ctgggagaag
541 catgaccgag gaaagaggat gtacaatgtc tgatactgaa atgccattta aatattcctc
601 tggtaaagcc ttcccattag gagtgtctca agttgaaggc gggctgaact tcgcactttt
661 ctctcagcat gcttcttctg tcattctctg cttaaagctt cctgggaggg gaactgaaga
721 tgagaaaggt gcagatgttg tcgagtttgt tttagaccag cagaagaaca aaactgggga
781 tatatggcat gtgatagtgg agggcttgcc tgcttctggt gttctttatg ggtatcgtgt
841 tggtggccct caaggatggg accaaggcca tagatttgat agcagcactg ttcttctgga
901 cccttatgca aaattagttt ctggtcgaaa gtactttggg gttgctgaag agaagtcaag
961 ccagcatttt ggaacatatg attttgatag ctctcctttt gattggggtg atgactacag
1021 gcttccgaat ttgcctgagg cagatctagt catatatgaa atgaacgtcc gtgctttcac
1081 cgcggatgag tcaagtggcc ttgattcgac ttctcgtgga agctatcttg gtctcattga
1141 taaaatccct catttgctgg aacttggcgt taatgcagtg gaactacttc ctgtttttga
1201 gtatgatgag ctggaattca agaggtaccc caacccaagg gaccacatgg tcaatacatg
1261 gggctattct acgataaact tttttgcacc catgagccgt tatgctagtg ccggtggtgg
1321 accagtggct gcttccaaag agctcaagca gatggtcaaa gaattgcata aagctggcat
1381 agaggttatt ctggatgttg tttacaacca tacaaatgag gcggatgatg ctcacccgta
1441 tatgacttct ttccgtggca ttgataacaa ggtctattac atgttagacc tgaacaaaaa
1501 tgctgaacta ctgaacttct caggctgcgg taaaaccatg gttcctgtac tcgtatacta
1561 atttatttgg gactttactc tatatcaata actgttttta ctgcaatcta atactaattc
1621 tgcttttgct taagacctta aaggatgtaa tatatctcag ttttacctat ggacatccaa
1681 ataccaaatt attaattata ttttctgtta agcctttatt tatacagctt tacagctggt
1741 tacttttaag aaaaatgcta tgatttattt ctgaaattac tgcttgtgta tcttgctgat
1801 ctaacatgtt taatgactag atacttacat atcacatgat ttgttcaaaa ttttgaaagt
1861 gtaattgttt cacttttaag tcttaacggt atgttttggt tcaacctagg gaatacactg
1921 aactgcaacc atcctgttgt caaggagctc attcttgaca gcttgagaca ctgggttgag
1981 gagtatcaca tagatggatt tcgatttgac cttgcaagtg ttctttgtcg tggaccagat
2041 ggttgtcctc ttgatgcacc tccactcatc aaggaaattg ccaaagatgc tgtattatct
2101 agatgtaaga tcattgctga accttgggat tgcggcggcc tttatctcgt agggcgtttc
2161 cctaactggg acaggtgggc tgaatggaac ggcaaataca gagatgatct tcgaagattt
2221 attaagggtg accctggtat gaagggggtg tttgcgactc gtgtgtctgg atctgctgat
2281 ctctatcagg tgaacgagcg gaagccttac catggtgtaa attttgtgat tgcacatgat
2341 ggatttactt tatgtgacct tgtttcttac aacttaaagc acaatgatgc taatggagaa
2401 ggtggctgtg atggatgcaa tgacaacttt agctggaact gtggtgttga aggagaaaca
2461 aatgatctga atgtgttaag tctgcgttca agacaaatga aaaacttcca tgtagcttta
2521 atgatttctc agggcacccc aatgatgttg atgggcgatg aatatggtca tacacgttat
2581 gggaacaaca atagctatgg acatgatact tgcattaata atttccaatg ggaacagttg
2641 gaacaaagaa gagatggcca tttcaggttt ttctcagaga tgataaagtt tcgtcacagc
2701 aacccaatat taagacgaga caggtttctt aataaaaacg atgtcacctg gcacgaggat
2761 tgttgggaga accaggaaag caaatttttg gcattcacag tacatgatca caactctggt
2821 ggagatatct atttggcatt caatgcacat gactattttg tggacgctgt aattccccca
2881 ccaccacacc ataaatgttg gaaccgtgtg gtggatacca acctggaatc accaaatgat
2941 attgtaccag aaggggtgcc atttacagga ccaaaataca gaattgctcc atactcttcc
3001 attctgctca aggcaaagcc ttagaaaagt tagtagttga gagcataaaa ataatgccac
3061 caatgctggc ttggttggtt aataacaggt tgatcacatt agcagtctgc acttcaaaaa
3121 ggcaacaggt atagagaatg tctaataaca actgccgaat catagttggc tttggcagat
3181 gaggccactt ttggcattca ggaatttctt ccagttatta ctgtaggaat gaatgggcta
3241 gggcttaggg ccctctgggg gcagcaaagc tcgaggtgtc gtctcggttt catgtgagcg
3301 tgacctggct atggtcaccc tatcatttat caaggtcctg tttcgtaata atgtgtcatc
3361 aaacactcaa ctcccatgag aatgtatgcc agcatctatt ttgctggaaa ttcatgaaaa
3421 aaaggaacaa tgctattagt ccc
//